NK2 homeobox 1

NK2 homeobox 1 (NKX2-1), also known as thyroid transcription factor 1 (TTF-1), is a protein which in humans is encoded by the NKX2-1 gene.[5][6]

Not to be confused with transcription termination factor, RNA polymerase I or TTF1.

NKX2-1
Identifiers
Aliases	NKX2-1, Nkx2-1, AV026640, Nkx2.1, T/EBP, Titf1, Ttf-1, BCH, BHC, NK-2, NKX2A, TEBP, TTF1, NMTC1, NK2 homeobox 1
External IDs	OMIM: 600635 MGI: 108067 HomoloGene: 2488 GeneCards: NKX2-1
Gene location (Human) Chr. Chromosome 14 (human)[1] Band 14q13.3 Start 36,516,392 bp[1] End 36,521,149 bp[1]
Gene location (Mouse) Chr. Chromosome 12 (mouse)[2] Band 12 C1|12 24.42 cM Start 56,531,958 bp[2] End 56,536,908 bp[2]
RNA expression pattern More reference expression data
Gene ontology Molecular function • DNA binding • sequence-specific DNA binding • GO:0001948 protein binding • enzyme binding • RNA polymerase II regulatory region sequence-specific DNA binding • intronic transcription regulatory region sequence-specific DNA binding • GO:0001131, GO:0001151, GO:0001130, GO:0001204 DNA-binding transcription factor activity • transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding • GO:0001200, GO:0001133, GO:0001201 DNA-binding transcription factor activity, RNA polymerase II-specific • GO:0000980 RNA polymerase II cis-regulatory region sequence-specific DNA binding Cellular component • nucleoplasm • cell nucleus • transcription factor complex Biological process • regulation of transcription, DNA-templated • rhythmic process • negative regulation of transforming growth factor beta receptor signaling pathway • transcription, DNA-templated • positive regulation of gene expression • negative regulation of cell migration • response to hormone • forebrain development • epithelial tube branching involved in lung morphogenesis • negative regulation of epithelial to mesenchymal transition • negative regulation of transcription from RNA polymerase II promoter • neuron migration • regulation of transcription from RNA polymerase II promoter • phospholipid metabolic process • pattern specification process • axon guidance • brain development • endoderm development • locomotory behavior • animal organ morphogenesis • telencephalon development • globus pallidus development • hippocampus development • cerebral cortex cell migration • forebrain dorsal/ventral pattern formation • forebrain neuron fate commitment • forebrain neuron differentiation • cerebral cortex GABAergic interneuron differentiation • cerebral cortex neuron differentiation • pituitary gland development • telencephalon cell migration • lung development • thyroid gland development • developmental induction • Leydig cell differentiation • positive regulation of circadian rhythm • negative regulation of transcription, DNA-templated • positive regulation of transcription, DNA-templated • positive regulation of transcription from RNA polymerase II promoter • anatomical structure formation involved in morphogenesis • neuron fate commitment • oligodendrocyte differentiation • lung saccule development • Clara cell differentiation • Type II pneumocyte differentiation • cell differentiation Sources:Amigo / QuickGO
Orthologs
Species	Human	Mouse
Entrez	7080	21869
Ensembl	ENSG00000136352	ENSMUSG00000001496
UniProt	P43699	P50220
RefSeq (mRNA)	NM_001079668 NM_003317	NM_001146198 NM_009385
RefSeq (protein)	NP_001073136 NP_003308	NP_033411
Location (UCSC)	Chr 14: 36.52 – 36.52 Mb	Chr 12: 56.53 – 56.54 Mb
PubMed search	[3]	[4]
Wikidata
View/Edit Human View/Edit Mouse

Function

Thyroid transcription factor-1 (TTF-1) is a protein that regulates transcription of genes specific for the thyroid, lung, and diencephalon. It is also known as thyroid specific enhancer binding protein. It is used in anatomic pathology as a marker to determine if a tumor arises from the lung or thyroid. NKX2.1 can be induced by activin A via SMAD2 signaling in a human embryonic stem cell differentiation model.[7]

Clinical significance

Micrograph of a metastatic lung adenocarcinoma (found in the brain) that exhibits nuclear staining (brown) for TTF-1.

TTF-1 positive cells are found in the lung as type II pneumocytes and club cells. In the thyroid, follicular and parafollicular cells are also positive for TTF-1.

For lung cancers, adenocarcinomas are usually positive, while squamous cell carcinomas and large cell carcinomas are rarely positive. Small cell carcinomas (of any primary site) are usually positive. TTF1 is more than merely a clinical marker of lung adenocarcinoma. It plays an active role in sustaining lung cancer cells in view of the experimental observation that it is mutated in lung cancer.[8][9][10][11]

It has been observed that a loss of Nkx2-1 allows for deregulation of transcription factors FOXA1/2 (by relaxing histone deacetylation and methylation-mediated repression of Foxa1/2 by Nkx2-1) causing reactivation of an embryonic gastric differentiation program in pulmonary cells. This results in mucinous lung adenocarcinoma, a source of poor clinical outcomes for patients.[12]

However others have found that TTF-1 staining is often positive in pulmonary adenocarcinomas, large cell carcinomas, small-cell lung carcinomas, neuroendocrine tumors other than small-cell lung carcinomas and extrapulmonary small-cell carcinomas.[13]

It is also positive in thyroid cancers and is used for monitoring for metastasis and recurrence.[14]

Interactions

NK2 homeobox 1 has been shown to interact with Calreticulin[15] and PAX8.[16]

References

1. GRCh38: Ensembl release 89: ENSG00000136352 - Ensembl, May 2017
2. GRCm38: Ensembl release 89: ENSMUSG00000001496 - Ensembl, May 2017
3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. "Entrez Gene: NKX2-1".
6. Guazzi S, Price M, De Felice M, Damante G, Mattei MG, Di Lauro R (Nov 1990). "Thyroid nuclear factor 1 (TTF-1) contains a homeodomain and displays a novel DNA binding specificity". The EMBO Journal. 9 (11): 3631–9. doi:10.1002/j.1460-2075.1990.tb07574.x. PMC 552115. PMID 1976511.
7. Li Y, Eggermont K, Vanslembrouck V, Verfaillie CM (May 2013). "NKX2-1 activation by SMAD2 signaling after definitive endoderm differentiation in human embryonic stem cell". Stem Cells and Development. 22 (9): 1433–42. doi:10.1089/scd.2012.0620. PMC 3629846. PMID 23259454.
8. Kendall J, Liu Q, Bakleh A, Krasnitz A, Nguyen KC, Lakshmi B, Gerald WL, Powers S, Mu D (Oct 2007). "Oncogenic cooperation and coamplification of developmental transcription factor genes in lung cancer". Proceedings of the National Academy of Sciences of the United States of America. 104 (42): 16663–8. Bibcode:2007PNAS..10416663K. doi:10.1073/pnas.0708286104. PMC 2034240. PMID 17925434.
9. Tanaka H, Yanagisawa K, Shinjo K, Taguchi A, Maeno K, Tomida S, Shimada Y, Osada H, Kosaka T, Matsubara H, Mitsudomi T, Sekido Y, Tanimoto M, Yatabe Y, Takahashi T (Jul 2007). "Lineage-specific dependency of lung adenocarcinomas on the lung development regulator TTF-1". Cancer Research. 67 (13): 6007–11. doi:10.1158/0008-5472.CAN-06-4774. PMID 17616654.
10. Weir BA, Woo MS, Getz G, Perner S, Ding L, Beroukhim R, Lin WM, Province MA, Kraja A, Johnson LA, Shah K, Sato M, Thomas RK, Barletta JA, Borecki IB, Broderick S, Chang AC, Chiang DY, Chirieac LR, Cho J, Fujii Y, Gazdar AF, Giordano T, Greulich H, Hanna M, Johnson BE, Kris MG, Lash A, Lin L, Lindeman N, Mardis ER, McPherson JD, Minna JD, Morgan MB, Nadel M, Orringer MB, Osborne JR, Ozenberger B, Ramos AH, Robinson J, Roth JA, Rusch V, Sasaki H, Shepherd F, Sougnez C, Spitz MR, Tsao MS, Twomey D, Verhaak RG, Weinstock GM, Wheeler DA, Winckler W, Yoshizawa A, Yu S, Zakowski MF, Zhang Q, Beer DG, Wistuba II, Watson MA, Garraway LA, Ladanyi M, Travis WD, Pao W, Rubin MA, Gabriel SB, Gibbs RA, Varmus HE, Wilson RK, Lander ES, Meyerson M (Dec 2007). "Characterizing the cancer genome in lung adenocarcinoma". Nature. 450 (7171): 893–8. Bibcode:2007Natur.450..893W. doi:10.1038/nature06358. PMC 2538683. PMID 17982442.
11. Kwei KA, Kim YH, Girard L, Kao J, Pacyna-Gengelbach M, Salari K, Lee J, Choi YL, Sato M, Wang P, Hernandez-Boussard T, Gazdar AF, Petersen I, Minna JD, Pollack JR (Jun 2008). "Genomic profiling identifies TITF1 as a lineage-specific oncogene amplified in lung cancer". Oncogene. 27 (25): 3635–40. doi:10.1038/sj.onc.1211012. PMC 2903002. PMID 18212743.
12. Snyder, Eric L.; Watanabe, Hideo; Magendantz, Margaret; Hoersch, Sebastian; Chen, Tiffany A.; Wang, Diana G.; Crowley, Denise; Whittaker, Charles A.; Meyerson, Matthew; Kimura, Shioko; Jacks, Tyler (2013-04-25). "Nkx2-1 Represses a Latent Gastric Differentiation Program in Lung Adenocarcinoma". Molecular Cell. 50 (2): 185–199. doi:10.1016/j.molcel.2013.02.018. ISSN 1097-2765. PMC 3721642. PMID 23523371.
13. Kalhor N, Zander DS, Liu J (Aug 2006). "TTF-1 and p63 for distinguishing pulmonary small-cell carcinoma from poorly differentiated squamous cell carcinoma in previously pap-stained cytologic material". Modern Pathology. 19 (8): 1117–23. doi:10.1038/modpathol.3800629. PMID 16680154.
14. Espinoza CR, Schmitt TL, Loos U (Aug 2001). "Thyroid transcription factor 1 and Pax8 synergistically activate the promoter of the human thyroglobulin gene". Journal of Molecular Endocrinology. 27 (1): 59–67. doi:10.1677/jme.0.0270059. PMID 11463576.
15. Perrone L, Tell G, Di Lauro R (Feb 1999). "Calreticulin enhances the transcriptional activity of thyroid transcription factor-1 by binding to its homeodomain". The Journal of Biological Chemistry. 274 (8): 4640–5. doi:10.1074/jbc.274.8.4640. PMID 9988700.
16. Di Palma T, Nitsch R, Mascia A, Nitsch L, Di Lauro R, Zannini M (Jan 2003). "The paired domain-containing factor Pax8 and the homeodomain-containing factor TTF-1 directly interact and synergistically activate transcription". The Journal of Biological Chemistry. 278 (5): 3395–402. doi:10.1074/jbc.M205977200. PMID 12441357.

Further reading

• Lau SK, Luthringer DJ, Eisen RN (Jun 2002). "Thyroid transcription factor-1: a review". Applied Immunohistochemistry & Molecular Morphology. 10 (2): 97–102. doi:10.1097/00022744-200206000-00001. PMID 12051643.
• Guazzi S, Price M, De Felice M, Damante G, Mattei MG, Di Lauro R (Nov 1990). "Thyroid nuclear factor 1 (TTF-1) contains a homeodomain and displays a novel DNA binding specificity". The EMBO Journal. 9 (11): 3631–9. doi:10.1002/j.1460-2075.1990.tb07574.x. PMC 552115. PMID 1976511.
• Oguchi H, Pan YT, Kimura S (Apr 1995). "The complete nucleotide sequence of the mouse thyroid-specific enhancer-binding protein (T/EBP) gene: extensive identity of the deduced amino acid sequence with the human protein". Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression. 1261 (2): 304–6. doi:10.1016/0167-4781(95)00033-D. PMID 7711079.
• Saiardi A, Tassi V, De Filippis V, Civitareale D (Apr 1995). "Cloning and sequence analysis of human thyroid transcription factor 1". Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression. 1261 (2): 307–10. doi:10.1016/0167-4781(95)00034-E. PMID 7711080.
• Ikeda K, Clark JC, Shaw-White JR, Stahlman MT, Boutell CJ, Whitsett JA (Apr 1995). "Gene structure and expression of human thyroid transcription factor-1 in respiratory epithelial cells". The Journal of Biological Chemistry. 270 (14): 8108–14. doi:10.1074/jbc.270.44.26460. PMID 7713914.
• Bonaldo MF, Lennon G, Soares MB (Sep 1996). "Normalization and subtraction: two approaches to facilitate gene discovery". Genome Research. 6 (9): 791–806. doi:10.1101/gr.6.9.791. PMID 8889548.
• Ghaffari M, Zeng X, Whitsett JA, Yan C (Dec 1997). "Nuclear localization domain of thyroid transcription factor-1 in respiratory epithelial cells". The Biochemical Journal. 328 (3): 757–61. doi:10.1042/bj3280757. PMC 1218983. PMID 9396717.
• Hamdan H, Liu H, Li C, Jones C, Lee M, deLemos R, Minoo P (Mar 1998). "Structure of the human Nkx2.1 gene". Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression. 1396 (3): 336–48. doi:10.1016/S0167-4781(97)00210-8. PMID 9545595.
• Perrone L, Tell G, Di Lauro R (Feb 1999). "Calreticulin enhances the transcriptional activity of thyroid transcription factor-1 by binding to its homeodomain". The Journal of Biological Chemistry. 274 (8): 4640–5. doi:10.1074/jbc.274.8.4640. PMID 9988700.
• Naltner A, Ghaffari M, Whitsett JA, Yan C (Jan 2000). "Retinoic acid stimulation of the human surfactant protein B promoter is thyroid transcription factor 1 site-dependent". The Journal of Biological Chemistry. 275 (1): 56–62. doi:10.1074/jbc.275.1.56. PMID 10617585.
• Missero C, Pirro MT, Di Lauro R (Apr 2000). "Multiple ras downstream pathways mediate functional repression of the homeobox gene product TTF-1". Molecular and Cellular Biology. 20 (8): 2783–93. doi:10.1128/MCB.20.8.2783-2793.2000. PMC 85494. PMID 10733581.
• Naltner A, Wert S, Whitsett JA, Yan C (Dec 2000). "Temporal/spatial expression of nuclear receptor coactivators in the mouse lung". American Journal of Physiology. Lung Cellular and Molecular Physiology. 279 (6): L1066–74. doi:10.1152/ajplung.2000.279.6.l1066. PMID 11076796.
• Yan C, Naltner A, Conkright J, Ghaffari M (Jun 2001). "Protein-protein interaction of retinoic acid receptor alpha and thyroid transcription factor-1 in respiratory epithelial cells". The Journal of Biological Chemistry. 276 (24): 21686–91. doi:10.1074/jbc.M011378200. PMID 11274148.
• Missero C, Pirro MT, Simeone S, Pischetola M, Di Lauro R (Sep 2001). "The DNA glycosylase T:G mismatch-specific thymine DNA glycosylase represses thyroid transcription factor-1-activated transcription". The Journal of Biological Chemistry. 276 (36): 33569–75. doi:10.1074/jbc.M104963200. PMID 11438542.
• Yi M, Tong GX, Murry B, Mendelson CR (Jan 2002). "Role of CBP/p300 and SRC-1 in transcriptional regulation of the pulmonary surfactant protein-A (SP-A) gene by thyroid transcription factor-1 (TTF-1)". The Journal of Biological Chemistry. 277 (4): 2997–3005. doi:10.1074/jbc.M109793200. PMID 11713256.
• Liu C, Glasser SW, Wan H, Whitsett JA (Feb 2002). "GATA-6 and thyroid transcription factor-1 directly interact and regulate surfactant protein-C gene expression". The Journal of Biological Chemistry. 277 (6): 4519–25. doi:10.1074/jbc.M107585200. PMID 11733512.
• Ng WK, Chow JC, Ng PK (Feb 2002). "Thyroid transcription factor-1 is highly sensitive and specific in differentiating metastatic pulmonary from extrapulmonary adenocarcinoma in effusion fluid cytology specimens". Cancer. 96 (1): 43–8. doi:10.1002/cncr.10310. PMID 11836702.
• Pohlenz J, Dumitrescu A, Zundel D, Martiné U, Schönberger W, Koo E, Weiss RE, Cohen RN, Kimura S, Refetoff S (Feb 2002). "Partial deficiency of thyroid transcription factor 1 produces predominantly neurological defects in humans and mice". The Journal of Clinical Investigation. 109 (4): 469–73. doi:10.1172/JCI14192. PMC 150877. PMID 11854318.
• Krude H, Schütz B, Biebermann H, von Moers A, Schnabel D, Neitzel H, Tönnies H, Weise D, Lafferty A, Schwarz S, DeFelice M, von Deimling A, van Landeghem F, DiLauro R, Grüters A (Feb 2002). "Choreoathetosis, hypothyroidism, and pulmonary alterations due to human NKX2-1 haploinsufficiency". The Journal of Clinical Investigation. 109 (4): 475–80. doi:10.1172/JCI14341. PMC 150790. PMID 11854319.
• Miccadei S, De Leo R, Zammarchi E, Natali PG, Civitareale D (Apr 2002). "The synergistic activity of thyroid transcription factor 1 and Pax 8 relies on the promoter/enhancer interplay". Molecular Endocrinology. 16 (4): 837–46. doi:10.1210/me.16.4.837. PMID 11923479.

External links

• TITF1+protein,+human at the US National Library of Medicine Medical Subject Headings (MeSH)

This article incorporates text from the United States National Library of Medicine, which is in the public domain.