PHF21A

PHD finger protein 21A is a protein that in humans is encoded by the PHF21A gene.[5][6][7]

PHF21A
Available structures
PDBOrtholog search: PDBe RCSB
Identifiers
AliasesPHF21A, BHC80, BM-006, PHD finger protein 21A, NEDMS, IDDBCS
External IDsOMIM: 608325 MGI: 2384756 HomoloGene: 9597 GeneCards: PHF21A
Gene location (Human)
Chr.Chromosome 11 (human)[1]
Band11p11.2Start45,929,323 bp[1]
End46,121,178 bp[1]
RNA expression pattern
More reference expression data
Orthologs
SpeciesHumanMouse
Entrez

51317

192285

Ensembl

ENSG00000135365

ENSMUSG00000058318

UniProt

Q96BD5

Q6ZPK0

RefSeq (mRNA)
RefSeq (protein)
Location (UCSC)Chr 11: 45.93 – 46.12 MbChr 2: 92.09 – 92.36 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Function

BHC80 is a component of a BRAF35 (MIM 605535)/histone deacetylase (HDAC; see MIM 601241) complex (BHC) that mediates repression of neuron-specific genes through the cis-regulatory element known as repressor element-1 (RE1) or neural restrictive silencer (NRS) (Hakimi et al., 2002).[supplied by OMIM][7]

Interactions

PHF21A has been shown to interact with:

gollark: What if we ask someone missing, what is it, Wernicke's area, which is the bit of the brain doing language processing?
gollark: What if we ask speakers of more tightly controlled languages like French?
gollark: What if we ask someone who has somehow not been exposed to the idea of "grammar" and doesn't understand the question?
gollark: Fascinating.
gollark: According to what, the grammar police?

References

  1. GRCh38: Ensembl release 89: ENSG00000135365 - Ensembl, May 2017
  2. GRCm38: Ensembl release 89: ENSMUSG00000058318 - Ensembl, May 2017
  3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. Nagase T, Kikuno R, Hattori A, Kondo Y, Okumura K, Ohara O (2000). "Prediction of the coding sequences of unidentified human genes. XIX. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro". DNA Res. 7 (6): 347–55. doi:10.1093/dnares/7.6.347. PMID 11214970.
  6. Hakimi MA, Bochar DA, Chenoweth J, Lane WS, Mandel G, Shiekhattar R (May 2002). "A core-BRAF35 complex containing histone deacetylase mediates repression of neuronal-specific genes". Proc. Natl. Acad. Sci. U.S.A. 99 (11): 7420–5. doi:10.1073/pnas.112008599. PMC 124246. PMID 12032298.
  7. "Entrez Gene: PHF21A PHD finger protein 21A".
  8. Iwase S, Januma A, Miyamoto K, Shono N, Honda A, Yanagisawa J, Baba T (Sep 2004). "Characterization of BHC80 in BRAF-HDAC complex, involved in neuron-specific gene repression". Biochem. Biophys. Res. Commun. 322 (2): 601–8. doi:10.1016/j.bbrc.2004.07.163. PMID 15325272.
  9. Hakimi MA, Dong Y, Lane WS, Speicher DW, Shiekhattar R (Feb 2003). "A candidate X-linked mental retardation gene is a component of a new family of histone deacetylase-containing complexes". J. Biol. Chem. 278 (9): 7234–9. doi:10.1074/jbc.M208992200. PMID 12493763.

Further reading

  • Shi YJ, Matson C, Lan F, Iwase S, Baba T, Shi Y (2005). "Regulation of LSD1 histone demethylase activity by its associated factors". Mol. Cell. 19 (6): 857–64. doi:10.1016/j.molcel.2005.08.027. PMID 16140033.
  • Rual JF, Venkatesan K, Hao T, Hirozane-Kishikawa T, Dricot A, Li N, Berriz GF, Gibbons FD, Dreze M, Ayivi-Guedehoussou N, Klitgord N, Simon C, Boxem M, Milstein S, Rosenberg J, Goldberg DS, Zhang LV, Wong SL, Franklin G, Li S, Albala JS, Lim J, Fraughton C, Llamosas E, Cevik S, Bex C, Lamesch P, Sikorski RS, Vandenhaute J, Zoghbi HY, Smolyar A, Bosak S, Sequerra R, Doucette-Stamm L, Cusick ME, Hill DE, Roth FP, Vidal M (2005). "Towards a proteome-scale map of the human protein-protein interaction network". Nature. 437 (7062): 1173–8. doi:10.1038/nature04209. PMID 16189514.
  • Hailesellasse Sene K, Porter CJ, Palidwor G, Perez-Iratxeta C, Muro EM, Campbell PA, Rudnicki MA, Andrade-Navarro MA (2007). "Gene function in early mouse embryonic stem cell differentiation". BMC Genomics. 8: 85. doi:10.1186/1471-2164-8-85. PMC 1851713. PMID 17394647.

This article incorporates text from the United States National Library of Medicine, which is in the public domain.


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