CLIC5

Chloride intracellular channel protein 5 is a protein that in humans is encoded by the CLIC5 gene.[5][6]

CLIC5
Identifiers
Aliases	CLIC5, MST130, MSTP130, DFNB102, DFNB103, chloride intracellular channel 5
External IDs	OMIM: 607293 MGI: 1917912 HomoloGene: 987 GeneCards: CLIC5
Gene location (Human) Chr. Chromosome 6 (human)[1] Band 6p21.1 Start 45,880,827 bp[1] End 46,080,348 bp[1]
Gene location (Mouse) Chr. Chromosome 17 (mouse)[2] Band 17|17 B3 Start 44,134,768 bp[2] End 44,280,172 bp[2]
RNA expression pattern More reference expression data
Gene ontology Molecular function • GO:0001948 protein binding • voltage-gated ion channel activity • glutathione transferase activity • chloride channel activity Cellular component • cell cortex • microtubule organizing center • cytoskeleton • chloride channel complex • actin cytoskeleton • integral component of membrane • membrane • extracellular exosome • Golgi apparatus • cell nucleus • cytoplasm • cell membrane • apical plasma membrane Biological process • regulation of ion transmembrane transport • ion transport • sensory perception of sound • female pregnancy • chloride transport • glutathione metabolic process • auditory receptor cell stereocilium organization • chloride transmembrane transport • transport • ion transmembrane transport • visual perception • response to stimulus Sources:Amigo / QuickGO
Orthologs
Species	Human	Mouse
Entrez	53405	224796
Ensembl	ENSG00000112782	ENSMUSG00000023959
UniProt	Q9NZA1 Q53G01 Q49AE1	Q8BXK9
RefSeq (mRNA)	NM_001114086 NM_001256023 NM_016929 NM_001370649 NM_001370650	NM_172621
RefSeq (protein)	NP_001107558 NP_001242952 NP_058625 NP_001357578 NP_001357579 NP_001107558.1 NP_058625.2 NP_001242952.1	NP_766209
Location (UCSC)	Chr 6: 45.88 – 46.08 Mb	Chr 17: 44.13 – 44.28 Mb
PubMed search	[3]	[4]
Wikidata
View/Edit Human View/Edit Mouse

Expression and localization

CLIC5 exists in two alternative splice variants, a smaller CLIC5A and larger CLIC5B protein.

CLIC5A is expressed chiefly in the renal glomerulus, specifically in podocytes. Within the cell, CLIC5A is localized to the plasma membrane and the cytosol, and associates and is regulated by the actin cytoskeleton.[6] CLIC5A can form ion channels in vitro and its channel activity is regulated by actin, though measurement of its chloride conductance in vitro suggests that CLIC5A is equally selective for cations and anions.

Function

Although chloride intracellular channel (CLIC) proteins were thought to be involved in ion transport in subcellular compartments, their actual functions suggest their role in diverse cellular and physiological functions including apoptosis and angiogenesis in CLIC1.

CLIC5A, through its interactions with the small GTPase Rac1, induces the phosphorylation of ezrin-moeisin-radixin (ERM) proteins and localized production of the phosphoinositide phosphatidylinositol-4,5-bisphosphate.[7] These two events activate ezrin, enabling it to couple transmembrane proteins to the actin cytoskeleton, which could represent a mechanism by which podocyte foot processes form to enable renal filtration.[8]

Clinical relevance

CLIC5A deficiency in mouse models potentiates glomerular injury in hypertension. In these mice, podocyte foot processes were also more sparse and disperse than in wild-type mice.[8]

See also

• Chloride channel

References

1. GRCh38: Ensembl release 89: ENSG00000112782 - Ensembl, May 2017
2. GRCm38: Ensembl release 89: ENSMUSG00000023959 - Ensembl, May 2017
3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. Berryman M, Bretscher A (May 2000). "Identification of a novel member of the chloride intracellular channel gene family (CLIC5) that associates with the actin cytoskeleton of placental microvilli". Molecular Biology of the Cell. 11 (5): 1509–21. doi:10.1091/mbc.11.5.1509. PMC 14863. PMID 10793131.
6. "Entrez Gene: CLIC5 chloride intracellular channel 5".
7. Al-Momany A, Li L, Alexander RT, Ballermann BJ (December 2014). "Clustered PI(4,5)P₂ accumulation and ezrin phosphorylation in response to CLIC5A". Journal of Cell Science. 127 (Pt 24): 5164–78. doi:10.1242/jcs.147744. PMID 25344252.
8. Tavasoli M, Li L, Al-Momany A, Zhu LF, Adam BA, Wang Z, Ballermann BJ (April 2016). "The chloride intracellular channel 5A stimulates podocyte Rac1, protecting against hypertension-induced glomerular injury". Kidney International. 89 (4): 833–47. doi:10.1016/j.kint.2016.01.001. PMID 26924049.

Further reading

• Singh H (May 2010). "Two decades with dimorphic Chloride Intracellular Channels (CLICs)". FEBS Letters. 584 (10): 2112–21. doi:10.1016/j.febslet.2010.03.013. PMID 20226783.
• Maruyama K, Sugano S (January 1994). "Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides". Gene. 138 (1–2): 171–4. doi:10.1016/0378-1119(94)90802-8. PMID 8125298.
• Suzuki Y, Yoshitomo-Nakagawa K, Maruyama K, Suyama A, Sugano S (October 1997). "Construction and characterization of a full length-enriched and a 5'-end-enriched cDNA library". Gene. 200 (1–2): 149–56. doi:10.1016/S0378-1119(97)00411-3. PMID 9373149.
• Shanks RA, Larocca MC, Berryman M, Edwards JC, Urushidani T, Navarre J, Goldenring JR (October 2002). "AKAP350 at the Golgi apparatus. II. Association of AKAP350 with a novel chloride intracellular channel (CLIC) family member". The Journal of Biological Chemistry. 277 (43): 40973–80. doi:10.1074/jbc.M112277200. PMID 12163479.
• Suzuki T, Morita R, Sugimoto Y, Sugawara T, Bai DS, Alonso ME, Medina MT, Bailey JN, Rasmussen A, Ramos-Peek J, Cordova S, Rubio-Donnadieu F, Ochoa A, Jara-Prado A, Inazawa J, Delgado-Escueta AV, Yamakawa K (August 2002). "Identification and mutational analysis of candidate genes for juvenile myoclonic epilepsy on 6p11-p12: LRRC1, GCLC, KIAA0057 and CLIC5". Epilepsy Research. 50 (3): 265–75. doi:10.1016/S0920-1211(02)00052-9. PMID 12200217.
• Berryman M, Bruno J, Price J, Edwards JC (August 2004). "CLIC-5A functions as a chloride channel in vitro and associates with the cortical actin cytoskeleton in vitro and in vivo". The Journal of Biological Chemistry. 279 (33): 34794–801. doi:10.1074/jbc.M402835200. PMID 15184393.
• Otsuki T, Ota T, Nishikawa T, Hayashi K, Suzuki Y, Yamamoto J, Wakamatsu A, Kimura K, Sakamoto K, Hatano N, Kawai Y, Ishii S, Saito K, Kojima S, Sugiyama T, Ono T, Okano K, Yoshikawa Y, Aotsuka S, Sasaki N, Hattori A, Okumura K, Nagai K, Sugano S, Isogai T (2007). "Signal sequence and keyword trap in silico for selection of full-length human cDNAs encoding secretion or membrane proteins from oligo-capped cDNA libraries". DNA Research. 12 (2): 117–26. doi:10.1093/dnares/12.2.117. PMID 16303743.
• Gonzalez A, Ciobanu D, Sayers M, Sirr N, Dalton T, Davies M (October 2007). "Gene transcript amplification from cell lysates in continuous-flow microfluidic devices". Biomedical Microdevices. 9 (5): 729–36. doi:10.1007/s10544-007-9083-1. PMID 17492382.
• Singh H, Cousin MA, Ashley RH (December 2007). "Functional reconstitution of mammalian 'chloride intracellular channels' CLIC1, CLIC4 and CLIC5 reveals differential regulation by cytoskeletal actin". The FEBS Journal. 274 (24): 6306–16. doi:10.1111/j.1742-4658.2007.06145.x. PMID 18028448.

External links

• CLIC5+protein,+human at the US National Library of Medicine Medical Subject Headings (MeSH)
• Human CLIC5 genome location and CLIC5 gene details page in the UCSC Genome Browser.

This article incorporates text from the United States National Library of Medicine, which is in the public domain.