Cell division cycle 7-related protein kinase

Cell division cycle 7-related protein kinase is an enzyme that in humans is encoded by the CDC7 gene.[5][6][7] The Cdc7 kinase is involved in regulation of the cell cycle at the point of chromosomal DNA replication.[8] The gene CDC7 appears to be conserved throughout eukaryotic evolution; this means that most eukaryotic cells have the Cdc7 kinase protein.

CDC7
Available structures PDB Ortholog search: PDBe RCSB List of PDB id codes 4F99, 4F9A, 4F9B, 4F9C
Identifiers
Aliases	CDC7, CDC7L1, HsHsk1, hucell division cycle 7
External IDs	OMIM: 603311 MGI: 1309511 HomoloGene: 31166 GeneCards: CDC7
Gene location (Human) Chr. Chromosome 1 (human)[1] Band 1p22.1 Start 91,500,851 bp[1] End 91,525,764 bp[1]
Gene location (Mouse) Chr. Chromosome 5 (mouse)[2] Band 5|5 E5 Start 106,964,322 bp[2] End 106,984,432 bp[2]
RNA expression pattern More reference expression data
Gene ontology Molecular function • transferase activity • protein kinase activity • nucleotide binding • metal ion binding • kinase activity • protein serine/threonine kinase activity • GO:0001948 protein binding • ATP binding Cellular component • cytoplasm • nucleoplasm • intercellular bridge • cell nucleus • mitotic spindle Biological process • cell cycle phase transition • phosphorylation • double-strand break repair via break-induced replication • positive regulation of nuclear cell cycle DNA replication • cell division • DNA replication • protein phosphorylation • DNA replication initiation • peptidyl-serine phosphorylation • positive regulation of cell proliferation • phagocytosis • positive regulation of G2/M transition of mitotic cell cycle • cell cycle • regulation of cell shape • negative regulation of G0 to G1 transition • G1/S transition of mitotic cell cycle • peptidyl-threonine phosphorylation Sources:Amigo / QuickGO
Orthologs
Species	Human	Mouse
Entrez	8317	12545
Ensembl	ENSG00000097046	ENSMUSG00000029283
UniProt	O00311	Q9Z0H0
RefSeq (mRNA)	NM_001134419 NM_001134420 NM_003503	NM_001271566 NM_001271567 NM_001271568 NM_009863
RefSeq (protein)	NP_001127891 NP_001127892 NP_003494	NP_001258495 NP_001258496 NP_001258497 NP_033993
Location (UCSC)	Chr 1: 91.5 – 91.53 Mb	Chr 5: 106.96 – 106.98 Mb
PubMed search	[3]	[4]
Wikidata
View/Edit Human View/Edit Mouse

Function

The product encoded by this gene is predominantly localized in the nucleus and is a cell division cycle protein with kinase activity. The protein is a serine-threonine kinase that is activated by another protein called either Dbf4 in the yeast Saccharomyces cerevisiae or ASK in mammals. The Cdc7/Dbf4 complex adds a phosphate group to the minichromosome maintenance (MCM) protein complex allowing for the initiation of DNA replication in mitosis (as explained in the Cdc7 and Replication section below). Although expression levels of the protein appear to be constant throughout the cell cycle, the protein kinase activity appears to increase during S phase. It has been suggested that the protein is essential for initiation of DNA replication and that it plays a role in regulating cell cycle progression. Overexpression of this gene product may be associated with neoplastic transformation for some tumors. Additional transcript sizes have been detected, suggesting the presence of alternative splicing.[7]

Cell cycle regulation

The gene, CDC7, is involved in the regulation of cell cycle because of the gene product Cdc7 kinase. The protein is expressed at constant levels throughout the cell cycle. The gene coding for the Dbf4 or ASK protein is regulated during the different phases of cell cycle. The concentration of Dbf4 at the G1/S transition of the cell cycle is higher than the concentration at the M/G1 transition. This tells us that Dbf4 is expressed around the time for replication; right after replication is over, the protein levels drop. Because the two proteins, Cdc7 and Dbf4, must form a complex before activating the MCM complex, the regulation of one protein is sufficient for both.

It has been shown that CDC7 is important for replication. There are several ways its expression can be altered that leads to problems. In mouse embryonic stem cells (ESCs), Cdc7 is needed for proliferation. Without the CDC7 gene DNA synthesis is stopped, and the ESCs do not grow. With the loss of function of Cdc7 in ESCs the S phase is stopped at the G2/M checkpoint. Recombinational repair (RR) is done at this point to try to fix the CDC7 gene so replication can occur. By copying and replacing the altered area with a very similar area on the sister homolog chromosome, the gene can be replicated as if nothing was ever wrong on the chromosome. However, when the cell enters this arrested state, levels of p53 may increase. These increased levels of p53 may initiate cell death.[8]

Replication

After chromatin undergoes changes in telophase of mitosis, the hexameric protein complex of MCM proteins 2-7 forms part of the pre-replication complex (pre-RC) by binding to the chromatin and other aiding proteins (Cdc6 and Cdt1).[9] Mitosis occurs during M phase of the cell cycle and has a number of stages; telophase is the end stage of mitosis when the replication of chromosomes is complete, but separation has not occurred.

The Cdc7/Dbf4 kinase complex, along with another serine-threonine kinase, cyclin-dependent kinase (Cdk), phosphorylates the pre-RC which activates it at the G1/S transition. The Dbf4 tethers itself to part of the pre-RC, the origin recognition complex (ORC). Since Cdc7 is attached to the Dbf4 protein the entire complex is held in place during replication. This activation of MCM 2 leads to helicase activity of the MCM complex at the origin of replication. This is most likely due to the change in conformation allowing the remainder of replication machinery proteins to be loaded. DNA replication can begin after all the necessary proteins are in place.[10]

Interactions

CDC7 has been shown to interact with:

• DBF4,[11][12][13]
• MCM5,[11]
• MCM4,[11]
• MCM7,[11]
• ORC1L,[11] and
• ORC6L.[11]

Ligands

Inhibitors

• XL-413

References

1. GRCh38: Ensembl release 89: ENSG00000097046 - Ensembl, May 2017
2. GRCm38: Ensembl release 89: ENSMUSG00000029283 - Ensembl, May 2017
3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. Jiang W, Hunter T (Feb 1998). "Identification and characterization of a human protein kinase related to budding yeast Cdc7p". Proc. Natl. Acad. Sci. U.S.A. 94 (26): 14320–5. doi:10.1073/pnas.94.26.14320. PMC 24960. PMID 9405610.
6. Sato N, Arai K, Masai H (Sep 1997). "Human and Xenopus cDNAs encoding budding yeast Cdc7-related kinases: in vitro phosphorylation of MCM subunits by a putative human homologue of Cdc7". EMBO J. 16 (14): 4340–51. doi:10.1093/emboj/16.14.4340. PMC 1170060. PMID 9250678.
7. "Entrez Gene: CDC7 cell division cycle 7 homolog (S. cerevisiae)".
8. Kim JM, Yamada M, Masai H (November 2003). "Functions of mammalian Cdc7 kinase in initiation/monitoring of DNA replication and development". Mutat. Res. 532 (1–2): 29–40. doi:10.1016/j.mrfmmm.2003.08.008. PMID 14643427.
9. http://web.ebscohost.com/ehost/detail?vid=1&hid=103&sid=8203ee5c-045a-4f4e-8a10-57fd0ba66be1%40sessionmgr103%5B%5D
10. Masai H, You Z, Arai K (2005). "Control of DNA replication: regulation and activation of eukaryotic replicative helicase, MCM". IUBMB Life. 57 (4–5): 323–35. doi:10.1080/15216540500092419. PMID 16036617.
11. Kneissl M, Pütter V, Szalay AA, Grummt F (March 2003). "Interaction and assembly of murine pre-replicative complex proteins in yeast and mouse cells". J. Mol. Biol. 327 (1): 111–28. doi:10.1016/S0022-2836(03)00079-2. PMID 12614612.
12. Kumagai H, Sato N, Yamada M, Mahony D, Seghezzi W, Lees E, Arai K, Masai H (July 1999). "A novel growth- and cell cycle-regulated protein, ASK, activates human Cdc7-related kinase and is essential for G1/S transition in mammalian cells". Mol. Cell. Biol. 19 (7): 5083–95. doi:10.1128/MCB.19.7.5083. PMC 84351. PMID 10373557.
13. Jiang W, McDonald D, Hope TJ, Hunter T (October 1999). "Mammalian Cdc7-Dbf4 protein kinase complex is essential for initiation of DNA replication". EMBO J. 18 (20): 5703–13. doi:10.1093/emboj/18.20.5703. PMC 1171637. PMID 10523313.

Further reading

• Sato N, Arai K, Masai H (1997). "Human and Xenopus cDNAs encoding budding yeast Cdc7-related kinases: in vitro phosphorylation of MCM subunits by a putative human homologue of Cdc7". EMBO J. 16 (14): 4340–51. doi:10.1093/emboj/16.14.4340. PMC 1170060. PMID 9250678.
• Jiang W, Hunter T (1997). "Identification and characterization of a human protein kinase related to budding yeast Cdc7p". Proc. Natl. Acad. Sci. U.S.A. 94 (26): 14320–5. doi:10.1073/pnas.94.26.14320. PMC 24960. PMID 9405610.
• Hess GF, Drong RF, Weiland KL, Slightom JL, Sclafani RA, Hollingsworth RE (1998). "A human homolog of the yeast CDC7 gene is overexpressed in some tumors and transformed cell lines". Gene. 211 (1): 133–40. doi:10.1016/S0378-1119(98)00094-8. PMID 9573348.
• Kumagai H, Sato N, Yamada M, Mahony D, Seghezzi W, Lees E, Arai K, Masai H (1999). "A novel growth- and cell cycle-regulated protein, ASK, activates human Cdc7-related kinase and is essential for G1/S transition in mammalian cells". Mol. Cell. Biol. 19 (7): 5083–95. doi:10.1128/MCB.19.7.5083. PMC 84351. PMID 10373557.
• Jiang W, McDonald D, Hope TJ, Hunter T (1999). "Mammalian Cdc7-Dbf4 protein kinase complex is essential for initiation of DNA replication". EMBO J. 18 (20): 5703–13. doi:10.1093/emboj/18.20.5703. PMC 1171637. PMID 10523313.
• Masai H, Matsui E, You Z, Ishimi Y, Tamai K, Arai K (2000). "Human Cdc7-related kinase complex. In vitro phosphorylation of MCM by concerted actions of Cdks and Cdc7 and that of a criticial threonine residue of Cdc7 bY Cdks". J. Biol. Chem. 275 (37): 29042–52. doi:10.1074/jbc.M002713200. PMID 10846177.
• Ishimi Y, Komamura-Kohno Y, Arai K, Masai H (2001). "Biochemical activities associated with mouse Mcm2 protein". J. Biol. Chem. 276 (46): 42744–52. doi:10.1074/jbc.M106861200. PMID 11568184.
• Montagnoli A, Bosotti R, Villa F, Rialland M, Brotherton D, Mercurio C, Berthelsen J, Santocanale C (2002). "Drf1, a novel regulatory subunit for human Cdc7 kinase". EMBO J. 21 (12): 3171–81. doi:10.1093/emboj/cdf290. PMC 126049. PMID 12065429.
• Kneissl M, Pütter V, Szalay AA, Grummt F (2003). "Interaction and assembly of murine pre-replicative complex proteins in yeast and mouse cells". J. Mol. Biol. 327 (1): 111–28. doi:10.1016/S0022-2836(03)00079-2. PMID 12614612.
• Montagnoli A, Tenca P, Sola F, Carpani D, Brotherton D, Albanese C, Santocanale C (2004). "Cdc7 inhibition reveals a p53-dependent replication checkpoint that is defective in cancer cells". Cancer Res. 64 (19): 7110–6. doi:10.1158/0008-5472.CAN-04-1547. PMID 15466207.
• Kurita M, Suzuki H, Masai H, Mizumoto K, Ogata E, Nishimoto I, Aiso S, Matsuoka M (2004). "Overexpression of CR/periphilin downregulates Cdc7 expression and induces S-phase arrest". Biochem. Biophys. Res. Commun. 324 (2): 554–61. doi:10.1016/j.bbrc.2004.09.083. PMID 15474462.
• Yoshizawa-Sugata N, Ishii A, Taniyama C, Matsui E, Arai K, Masai H (2005). "A second human Dbf4/ASK-related protein, Drf1/ASKL1, is required for efficient progression of S and M phases". J. Biol. Chem. 280 (13): 13062–70. doi:10.1074/jbc.M411653200. PMID 15668232.
• Grishina I, Lattes B (2005). "A novel Cdk2 interactor is phosphorylated by Cdc7 and associates with components of the replication complexes". Cell Cycle. 4 (8): 1120–6. doi:10.4161/cc.4.8.1918. PMID 16082200.
• Montagnoli A, Valsasina B, Brotherton D, Troiani S, Rainoldi S, Tenca P, Molinari A, Santocanale C (2006). "Identification of Mcm2 phosphorylation sites by S-phase-regulating kinases". J. Biol. Chem. 281 (15): 10281–90. doi:10.1074/jbc.M512921200. PMID 16446360.
• Gérard A, Koundrioukoff S, Ramillon V, Sergère JC, Mailand N, Quivy JP, Almouzni G (2006). "The replication kinase Cdc7-Dbf4 promotes the interaction of the p150 subunit of chromatin assembly factor 1 with proliferating cell nuclear antigen". EMBO Rep. 7 (8): 817–23. doi:10.1038/sj.embor.7400750. PMC 1525143. PMID 16826239.
• Cho WH, Lee YJ, Kong SI, Hurwitz J, Lee JK (2006). "CDC7 kinase phosphorylates serine residues adjacent to acidic amino acids in the minichromosome maintenance 2 protein". Proc. Natl. Acad. Sci. U.S.A. 103 (31): 11521–6. doi:10.1073/pnas.0604990103. PMC 1544202. PMID 16864800.