mir-398 microRNA precursor family

In molecular biology mir-398 microRNA is a short RNA molecule. MicroRNAs function to regulate the expression levels of other genes by several mechanisms.

mir-398
Identifiers
Symbol	mir-398
Rfam	RF00695
miRBase family	MIPF0000107
Other data
RNA type	microRNA
Domain(s)	Eukaryota;
PDB structures	PDBe

See also

• MicroRNA

References

Further reading

• Mendoza-Soto AB, Sánchez F, Hernández G (2012). "MicroRNAs as regulators in plant metal toxicity response". Frontiers in Plant Science. 3: 105. doi:10.3389/fpls.2012.00105. PMC 3356851. PMID 22661980.
• Burklew CE, Ashlock J, Winfrey WB, Zhang B (2012). Wu K (ed.). "Effects of aluminum oxide nanoparticles on the growth, development, and microRNA expression of tobacco (Nicotiana tabacum)". PLOS ONE. 7 (5): e34783. doi:10.1371/journal.pone.0034783. PMC 3350507. PMID 22606225.
• Zhang J, Zhang S, Han S, Wu T, Li X, Li W, Qi L (August 2012). "Genome-wide identification of microRNAs in larch and stage-specific modulation of 11 conserved microRNAs and their targets during somatic embryogenesis". Planta. 236 (2): 647–57. doi:10.1007/s00425-012-1643-9. PMID 22526500.
• Jung JH, Seo PJ, Ahn JH, Park CM (May 2012). "Arabidopsis RNA-binding protein FCA regulates microRNA172 processing in thermosensory flowering". The Journal of Biological Chemistry. 287 (19): 16007–16. doi:10.1074/jbc.M111.337485. PMC 3346135. PMID 22431732.
• Ren L, Tang G (May 2012). "Identification of sucrose-responsive microRNAs reveals sucrose-regulated copper accumulations in an SPL7-dependent and independent manner in Arabidopsis thaliana". Plant Science. 187: 59–68. doi:10.1016/j.plantsci.2012.01.014. PMID 22404833.
• Sunkar R, Li YF, Jagadeeswaran G (April 2012). "Functions of microRNAs in plant stress responses". Trends in Plant Science. 17 (4): 196–203. doi:10.1016/j.tplants.2012.01.010. PMID 22365280.
• Guleria P, Yadav SK (December 2011). "Identification of miR414 and expression analysis of conserved miRNAs from Stevia rebaudiana". Genomics, Proteomics & Bioinformatics. 9 (6): 211–7. doi:10.1016/S1672-0229(11)60024-7. PMC 5054151. PMID 22289477.
• Zhao M, Tai H, Sun S, Zhang F, Xu Y, Li WX (2012). Pfeffer S (ed.). "Cloning and characterization of maize miRNAs involved in responses to nitrogen deficiency". PLOS ONE. 7 (1): e29669. doi:10.1371/journal.pone.0029669. PMC 3250470. PMID 22235323.
• Monavar Feshani A, Mohammadi S, Frazier TP, Abbasi A, Abedini R, Karimi Farsad L, Ehya F, Salekdeh GH, Mardi M (February 2012). "Identification and validation of Asteraceae miRNAs by the expressed sequence tag analysis". Gene. 493 (2): 253–9. doi:10.1016/j.gene.2011.11.024. PMID 22146318.
• Xu Z, Zhong S, Li X, Li W, Rothstein SJ, Zhang S, Bi Y, Xie C (2011). Moustafa A (ed.). "Genome-wide identification of microRNAs in response to low nitrate availability in maize leaves and roots". PLOS ONE. 6 (11): e28009. doi:10.1371/journal.pone.0028009. PMC 3223196. PMID 22132192.
• Lu S, Yang C, Chiang VL (November 2011). "Conservation and diversity of microRNA-associated copper-regulatory networks in Populus trichocarpa". Journal of Integrative Plant Biology. 53 (11): 879–91. doi:10.1111/j.1744-7909.2011.01080.x. PMID 22013976.
• Attallah CV, Welchen E, Martin AP, Spinelli SV, Bonnard G, Palatnik JF, Gonzalez DH (August 2011). "Plants contain two SCO proteins that are differentially involved in cytochrome c oxidase function and copper and redox homeostasis". Journal of Experimental Botany. 62 (12): 4281–94. doi:10.1093/jxb/err138. PMID 21543521.
• Zhu C, Ding Y, Liu H (September 2011). "MiR398 and plant stress responses". Physiologia Plantarum. 143 (1): 1–9. doi:10.1111/j.1399-3054.2011.01477.x. PMID 21496029.
• Kantar M, Lucas SJ, Budak H (March 2011). "miRNA expression patterns of Triticum dicoccoides in response to shock drought stress". Planta. 233 (3): 471–84. doi:10.1007/s00425-010-1309-4. PMID 21069383.
• Bouché N (June 2010). "New insights into miR398 functions in Arabidopsis". Plant Signaling & Behavior. 5 (6): 684–6. doi:10.4161/psb.5.6.11573. PMC 3001559. PMID 20400846.
• Miura E, Kato Y, Sakamoto W (May 2010). "Comparative transcriptome analysis of green/white variegated sectors in Arabidopsis yellow variegated2: responses to oxidative and other stresses in white sectors". Journal of Experimental Botany. 61 (9): 2433–45. doi:10.1093/jxb/erq075. PMC 2877895. PMID 20400527.
• Jia X, Mendu V, Tang G (2010). "An array platform for identification of stress-responsive microRNAs in plants". Methods in Molecular Biology. 639: 253–69. doi:10.1007/978-1-60761-702-0_15. ISBN 978-1-60761-701-3. PMID 20387051.
• Li YF, Zheng Y, Addo-Quaye C, Zhang L, Saini A, Jagadeeswaran G, Axtell MJ, Zhang W, Sunkar R (June 2010). "Transcriptome-wide identification of microRNA targets in rice". The Plant Journal. 62 (5): 742–59. doi:10.1111/j.1365-313X.2010.04187.x. PMID 20202174.
• Ding YF, Wang GY, Fu YP, Zhu C (February 2010). "[The role of miR398 in plant stress responses]". Yi Chuan = Hereditas. 32 (2): 129–34. doi:10.3724/sp.j.1005.2010.00129. PMID 20176556.
• Beauclair L, Yu A, Bouché N (May 2010). "microRNA-directed cleavage and translational repression of the copper chaperone for superoxide dismutase mRNA in Arabidopsis". The Plant Journal. 62 (3): 454–62. doi:10.1111/j.1365-313X.2010.04162.x. PMID 20128885.
• Lee H, Yoo SJ, Lee JH, Kim W, Yoo SK, Fitzgerald H, Carrington JC, Ahn JH (May 2010). "Genetic framework for flowering-time regulation by ambient temperature-responsive miRNAs in Arabidopsis". Nucleic Acids Research. 38 (9): 3081–93. doi:10.1093/nar/gkp1240. PMC 2875011. PMID 20110261.
• Gu M, Xu K, Chen A, Zhu Y, Tang G, Xu G (February 2010). "Expression analysis suggests potential roles of microRNAs for phosphate and arbuscular mycorrhizal signaling in Solanum lycopersicum". Physiologia Plantarum. 138 (2): 226–37. doi:10.1111/j.1399-3054.2009.01320.x. PMID 20015123.
• Trindade I, Capitão C, Dalmay T, Fevereiro MP, Santos DM (February 2010). "miR398 and miR408 are up-regulated in response to water deficit in Medicago truncatula". Planta. 231 (3): 705–16. doi:10.1007/s00425-009-1078-0. PMID 20012085.
• Hsieh LC, Lin SI, Shih AC, Chen JW, Lin WY, Tseng CY, Li WH, Chiou TJ (December 2009). "Uncovering small RNA-mediated responses to phosphate deficiency in Arabidopsis by deep sequencing". Plant Physiology. 151 (4): 2120–32. doi:10.1104/pp.109.147280. PMC 2785986. PMID 19854858.
• Jia X, Wang WX, Ren L, Chen QJ, Mendu V, Willcut B, Dinkins R, Tang X, Tang G (September 2009). "Differential and dynamic regulation of miR398 in response to ABA and salt stress in Populus tremula and Arabidopsis thaliana". Plant Molecular Biology. 71 (1–2): 51–9. doi:10.1007/s11103-009-9508-8. PMID 19533381.
• Ding YF, Zhu C (August 2009). "The role of microRNAs in copper and cadmium homeostasis". Biochemical and Biophysical Research Communications. 386 (1): 6–10. doi:10.1016/j.bbrc.2009.05.137. PMID 19501049.
• Siré C, Moreno AB, Garcia-Chapa M, López-Moya JJ, San Segundo B (March 2009). "Diurnal oscillation in the accumulation of Arabidopsis microRNAs, miR167, miR168, miR171 and miR398". FEBS Letters. 583 (6): 1039–44. doi:10.1016/j.febslet.2009.02.024. hdl:10261/101742. PMID 19236868.
• Jagadeeswaran G, Saini A, Sunkar R (March 2009). "Biotic and abiotic stress down-regulate miR398 expression in Arabidopsis". Planta. 229 (4): 1009–14. doi:10.1007/s00425-009-0889-3. PMID 19148671.
• Yamasaki H, Hayashi M, Fukazawa M, Kobayashi Y, Shikanai T (January 2009). "SQUAMOSA Promoter Binding Protein-Like7 Is a Central Regulator for Copper Homeostasis in Arabidopsis". The Plant Cell. 21 (1): 347–61. doi:10.1105/tpc.108.060137. PMC 2648088. PMID 19122104.
• Hewezi T, Howe P, Maier TR, Baum TJ (December 2008). "Arabidopsis small RNAs and their targets during cyst nematode parasitism". Molecular Plant-Microbe Interactions. 21 (12): 1622–34. doi:10.1094/MPMI-21-12-1622. PMID 18986258.
• Abdel-Ghany SE, Pilon M (June 2008). "MicroRNA-mediated systemic down-regulation of copper protein expression in response to low copper availability in Arabidopsis". The Journal of Biological Chemistry. 283 (23): 15932–45. doi:10.1074/jbc.M801406200. PMC 3259626. PMID 18408011.
• Dugas DV, Bartel B (July 2008). "Sucrose induction of Arabidopsis miR398 represses two Cu/Zn superoxide dismutases". Plant Molecular Biology. 67 (4): 403–17. doi:10.1007/s11103-008-9329-1. PMID 18392778.
• Yamasaki H, Pilon M, Shikanai T (April 2008). "How do plants respond to copper deficiency?". Plant Signaling & Behavior. 3 (4): 231–2. doi:10.4161/psb.3.4.5094. PMC 2634185. PMID 19704637.
• Buhtz A, Springer F, Chappell L, Baulcombe DC, Kehr J (March 2008). "Identification and characterization of small RNAs from the phloem of Brassica napus". The Plant Journal. 53 (5): 739–49. doi:10.1111/j.1365-313X.2007.03368.x. PMID 18005229.
• Yamasaki H, Abdel-Ghany SE, Cohu CM, Kobayashi Y, Shikanai T, Pilon M (June 2007). "Regulation of copper homeostasis by micro-RNA in Arabidopsis". The Journal of Biological Chemistry. 282 (22): 16369–78. doi:10.1074/jbc.M700138200. PMID 17405879.
• Sunkar R, Kapoor A, Zhu JK (August 2006). "Posttranscriptional induction of two Cu/Zn superoxide dismutase genes in Arabidopsis is mediated by downregulation of miR398 and important for oxidative stress tolerance". The Plant Cell. 18 (8): 2051–65. doi:10.1105/tpc.106.041673. PMC 1533975. PMID 16861386.

External links

• Page for mir-398 microRNA precursor family at Rfam