List of sequenced plant genomes

This list of sequenced plant genomes contains plant species known to have publicly available complete genome sequences that have been assembled, annotated and published. Unassembled genomes are not included, nor are organelle only sequences. For all kingdoms, see the list of sequenced genomes.

Algae

Unicellular photosynthetic eukaryotes. For a more complete list, see List of sequenced algae genomes.

Organism strain	Clade	Relevance	Genome size	Number of genes predicted	Organization	Year of completion	Assembly status	Links
Aureococcus anophagefferens	Heterokont	Harmful Algal Bloom	50.1 Mb	11,522	Joint Genome Institute	2011[1]		The Greenhouse[2]
Auxenochlorella protothecoides	Green Algae	Biofuels	22.9 Mb	7,039	Tsinghua University	2014[3]		The Greenhouse[2]
Bathycoccus prasinos RCC1105	Green algae	Comparative analysis	15 Mb		Joint Genome Institute	2012[4]
Bigelowiella natans	SAR (Rhizaria)		91.4 Mb	21,708	Dalhousie University	2012[5]		The Greenhouse[2]
Chlamydomonas reinhardtii CC-503 cw92 mt+	Green algae	Model organism	111 Mb	17,737	University of California at Los Angeles[6]	2007		"Chlamydomonas reinhardtii". National Center for Biotechnology Information (NCBI). ENA GCA_000002595
Chlorella sorokiniana str. 1228	Green Algae	Biofuels	61.4 Mb		Los Alamos National Lab	2018[7]		The Greenhouse[2]
Chlorella sorokiniana UTEX 1230	Green Algae	Biofuels	58.5 Mb		Los Alamos National Lab	2018[8]		The Greenhouse[2]
Chlorella sorokiniana DOE1412	Green Algae	Biofuels	57.8 Mb		Los Alamos National Lab	2018[9]		The Greenhouse[2]
Chlorella variabilis NC64A	Green algae					2010[10]
Chlorella vulgaris	Green Algae	Biofuels	37.3 Mb		Nagoya University	1997[11]		The Greenhouse[2]
Chondrus crispus	Red algae (Rhodophyte)		105 Mb	9,606	Genoscope/Station Biologique de Roscoff	2013[12]
Chrysochromulina parva	Haptophyte	Biofuels	65.8 Mb		Los Alamos National Lab	2018[13]		The Greenhouse[2]
Chrysochromulina tobinii	Haptophyte	Model Organism, Biofuels	59 Mb	16,777	Los Alamos National Lab	2015[14]		The Greenhouse[2]
Coccomyxa subellipsoidea sp. C-169	Green algae	Model biofuel			Joint Genome Institute	2007[15]
Cyanidioschyzon merolae Strain:10D	Red algae (Rhodophyte)	Photo-autotrophic	16.73 Mb	5,017		2004,[16] 2007[17]
Cyanophora paradoxa	Glaucophyte				Rutgers University[18]	2012[18]
Dunaliella salina CCAP19/18	Green algae	Halophilic, biofuel and beta-carotene production	343.7 Mb	16,697	Joint Genome Institute	2017[19][20]		Dunaliella Salina Genome Portal. Phytozome
Ectocarpus siliculosus	Brown algae (Heterokontophyta)	distantly related to plants			Station Biologique de Roscoff	2010[21]
Emiliania huxleyi	Haptophyte	Marine phytoplankton	167.7 Mb	39,126	Joint Genome Institute	2013[22]		The Greenhouse[2]
Eudorina sp.	Green algae	Multicellular alga, model organism	184 Mb (female) 168 Mb (male)		University of Tokyo	2018[23]
Galdieria sulphuraria	Red algae (Rhodophyte)	Thermo-acidophilic (extremophile)	13.7 Mb	6,623		2005[24] 2005[25] 2013[26]
Guillardia theta	Cryptomonad	Eukaryote Endosymbiosis	87.1 Mb		Dalhousie University	2012[5]		The Greenhouse[2]
Micromonas pusilla CCMP1545	Green algae	Marine phytoplankton			Joint Genome Institute	2007[27][28]
Micromonas pusilla RCC299/NOUM17	Green algae	Marine phytoplankton			Joint Genome Institute	2007[28][29]
Monoraphidium neglectum	Green Algae	Biofuels	69.7 Mb		Joint Genome Institute	2017[30]		The Greenhouse[2]
Nannochloropsis gaditana	SAR (Heterokont)	Biofuels	34.0 Mb		Colorado School of Mines	2012[31]		The Greenhouse[2]
Nannochloropsis oceanica	SAR (Heterokont)	Biofuels	31.5 Mb		Chinese Academy of Sciences, Qingdao Institute of Bioenergy and Bioprocess Technology	2016[32]		The Greenhouse[2]
Nannochloropsis Salina CCMP1776	SAR (Heterokont)	Biofuels, Feedstock	24.4 Mb		Chinese Academy of Sciences, Qingdao Institute of Bioenergy and Bioprocess Technology	2016[33]		The Greenhouse[2]
Ostreococcus lucimarinus CCE9901	Green algae	Simple eukaryote, small genome	13.2 Mb	7,796		2007[34]
Ostreococcus tauri OTH95	Green algae	Simple eukaryote, small genome				2006[35]
Ostreococcus sp. RCC809	Green algae			7,773	Joint Genome Institute	2008[36]
Phaeodactylum tricornutum	SAR (Heterokont)		27.4 Mb	10,402	Diatom Consortium	2008[37]		The Greenhouse[2]
Picochlorum soloecismus DOE101	Green algae	Biofuels	15.3 Mb		Los Alamos National Lab	2017[38]		The Greenhouse[2]
Picochlorum sp.	Green algae	Biofuels	13.3 Mb	7,367	Rutgers University	2014[39]		The Greenhouse[2]
Porphyridium purpureum	Red algae (Rhodophyte)		19.7 Mb	8,355		2013[40]
Pyropia yezoensis	Red algae (Rhodophyte)		43 Mb	10,327		2013[41]
Saccharina japonica	SAR (Heterokont) Brown Algae	Crop	543.4 Mb		Chinese Academy of Sciences, Beijing Institutes of Life Science	2015[42]		The Greenhouse[2]
Scenedesmus obliquus strain DOE0152Z	Green Algae	Biofuels	210.3 Mb		Brooklyn College	2017[43]		The Greenhouse[2]
Tetraselmis sp.	Green Algae	Biofuels	228 Mb		Los Alamos National Lab	2018[2]		The Greenhouse[2]
Thalassiosira oceanica CCMP1005	SAR (Heterokont)	model organism	92.2 Mb	34,642	The Future Ocean	2012[44]
Thalassiosira pseudonana	SAR (Heterokont)		32.4 Mb		Diatom Consortium	2009[45]		The Greenhouse[2]
Volvox carteri	Green algae	Multicellular alga, model organism	~131.2 Mb	14,971		2010[46]
Yamagishiella unicocca	Green algae	Multicellular alga, model organism	~140 Mb		The University of Tokyo	2018[23]

Bryophytes

Organism strain	Division	Relevance	Genome size	Number of genes predicted	Organization	Year of completion	Assembly status
Physcomitrella patens ssp. patens str. Gransden 2004	Bryophytes	Early diverging land plant				2008[47]
Marchantia polymorpha	Bryophytes	Early diverging land plant	225.8 Mb	19,138		2017[48]
Ceratodon purpureus	Bryophytes	Early diverging land plant
Anthoceros angustus	Bryophytes	Early diverging land plant

Higher plants (vascular plants)

Organism strain	Division	Relevance	Genome size	Number of genes predicted	Organization	Year of completion	Assembly status
Selaginella moellendorffii	Lycopodiophyta	Model organism				2011[49][50]

Ferns

Organism strain	Division	Relevance	Genome size	Number of genes predicted	Organization	Year of completion	Assembly status
Azolla filiculoides	Polypodiophyta	Fern	0.75 Gb	20,201		2018[51]
Salvinia cucullata	Polypodiophyta	Fern	0.26 Gb	19,914		2018[51]

Gymnosperms

Organism strain	Division	Relevance	Genome size	Number of genes predicted	No of chromosomes	Organization	Year of completion	Assembly status
Picea abies (Norway spruce)	Pinales	Timber, tonewood, ornamental such as Christmas tree	19.6 Gb	26,359[52]	12	Umeå Plant Science Centre / SciLifeLab, Sweden	2013[53]
Picea glauca (White spruce)	Pinales	Timber, Pulp	20.8 Gb	14,462[52]	12	Institutional Collaboration	2013[54][55]
Pinus taeda (Loblolly pine)	Pinales	Timber	20.15 Gb	9,024[52]	12		2014[56][57][58]	N50 scaffold size: 66.9 kbp
Pinus lambertiana (Sugar pine)	Pinales	Timber; with the largest genomes among the pines; the largest pine species	31 Gb	13,936	12		2016[52]	61.5X sequence coverage, platforms used: Hiseq 2000, Hiseq 2500, GAIIx, MiSeq
Ginkgo biloba	Ginkgoales		11.75 Gb	41,840			2016[59]	N50 scaffold size: 48.2 kbp
Pseudotsuga menziesii	Pinales		16 Gb	54,830	13		2017[60]	N50 scaffold size : 340.7 kbp
Gnetum monatum	Gnetales		4.07 Gb	27,491			2018[61]
Larix sibirica	Pinales		12.34 Gbp				2019[62]	scaffold N50 of 6440 bp
Abies alba	Pinales		18.16 Gb	94,205			2019[63]	scaffold N50 of 14,051 bp

Angiosperms

Amborellales

Organism strain	Family	Relevance	Genome size	Number of genes predicted	Organization	Year of completion	Assembly status
Amborella trichopoda	Amborellaceae	Basal angiosperm				2013[64][65]

Eudicots

Proteales

Organism strain	Family	Relevance	Genome size	Number of genes predicted	Organization	Year of completion	Assembly status
Nelumbo nucifera (sacred lotus)	Nelumbonaceae	Basal eudicot	929 Mbp			2013[66]	contig N50 of 38.8 kbp and a scaffold N50 of 3.4 Mbp

Ranunculales

Organism strain	Family	Relevance	Genome size	Number of genes predicted	Organization	Year of completion	Assembly status
Aquilegia coerulea	Ranunculaceae	Basal eudicot				Unpublished[67]

Trochodendrales

Organism strain	Family	Relevance	Genome size	Number of genes predicted	Organization	Year of completion	Assembly status
Trochodendron aralioides (Wheel tree)	Trochodendrales	Basal eudicot having secondary xylem without vessel elements	1.614 Gb	35,328	Guangxi University	2019[68]	19 scaffolds corresponding to 19 chromosomes

Caryophyllales

Organism strain	Family	Relevance	Genome size	Number of genes predicted	Organization	Year of completion	Assembly status
Beta vulgaris (sugar beet)	Chenopodiaceae	Crop plant	714–758 Mbp	27,421		2013[69]
Chenopodium quinoa	Chenopodiaceae	Crop plant	1.39–1.50 Gb	44,776		2017[70]	3,486 scaffolds, scaffold N50 of 3.84 Mb, 90% of the assembled genome is contained in 439 scaffolds[70]
Amaranthus hypocondriacus	Amaranthaceae	Crop plant	403.9 Mb	23,847		2016[71]	16 large scaffolds from 16.9 to 38.1 Mb. N50 and L50 of the assembly was 24.4 Mb and 7, respectively.[72]
Carnegiea gigantea	Cactaceae	Wild plant	1.40 Gb	28,292		2017[73]	57,409 scaffolds, scaffold N50 of 61.5 kb[73]
Suaeda aralocaspica	Amaranthaceae	Performs complete C4 photosynthesis within individual cells (SCC4)	467 Mb	29,604	ABLife Inc.	2019[74]	4,033 scaffolds, scaffold N50 length of 1.83 Mb
Simmondsia chinensis (jojoba)	Simmondsiaceae	Oilseed Crop	887 Mb	23,490		2020[75]	994 scaffolds, scaffold N50 length of 5.2 Mb

Rosids

Organism strain	Family	Relevance	Genome size	Number of genes predicted	No of chromosomes	Organization	Year of completion	Assembly status
Sclerocarya birrea (Marula)	Anacardiaceae	Used for food		18,397			2018[76][77]
Betula pendula (silver birch)	Betulaceae	Boreal forest tree, model for forest biotechnology	435 Mbp[78]	28,399	14	University of Helsinki	2017[78]	454/Illumina/PacBio. Assembly size 435 Mbp. Contig N50: 48,209 bp, scaffold N50: 239,796 bp. 89% of the assembly mapped to 14 pseudomolecules. Additionally 150 birch individuals sequenced.
Betula nana (dwarf birch)	Betulaceae	Arctic shrub	450 Mbp			QMUL/SBCS	2013[79]
Aethionema arabicum	Brassicaceae	Comparative analysis of crucifer genomes					2013[80]
Arabidopsis lyrata ssp. lyrata strain MN47	Brassicaceae	Model plant	206.7 Mbp	32,670[81]	8		2011[81]	8.3X sequence coverage, analyzed on ABI 3730XL capillary sequencers
Arabidopsis thaliana Ecotype:Columbia	Brassicaceae	Model plant	135 Mbp	27,655[82]	5	AGI	2000[83]
Barbarea vulgaris G-type	Brassicaceae	Model plant for specialised metabolites and plant defenses	167.7 Mbp	25,350	8		2017[84]	66.5 X coverage with Illumina GA II technology
Brassica rapa ssp. pekinensis (Chinese cabbage) accession Chiifu-401-42	Brassicaceae	Assorted crops and model organism	485 Mbp	41,174 (has undergone genome triplication)	10	The Brassica rapa Genome Sequencing Project Consortium	2011[85]	72X coverage of paired short read sequences generated by Illumina GA II technology
Brassica napus (Oilseed rape or rapeseed) European winter oilseed cultivar ‘Darmor-bzh'	Brassicaceae	Crops	1130 Mbp	101,040	19	Institutional Collaboration	2014[86]	454 GS-FLX+ Titanium (Roche, Basel, Switzerland) and Sanger sequencing. Correction and gap filling used 79 Gb of Illumina (San Diego, CA) HiSeq sequence.
Capsella rubella	Brassicaceae	Close relative of Arabidopsis thaliana	130 Mbp	26,521		JGI	2013?[87] 2013[88]
Cardamine hirsuta (hairy bittercress) strain ‘Oxford’	Brassicaceae	A model system for studies in evolution of plant development	198 Mbp	29,458	8	Max Planck Institute for Plant Breeding Research, Köln, Germany	2016[89]	Shotgun sequencing strategy, combining paired end reads (197× assembled sequence coverage) and mate pair reads (66× assembled) from Illumina HiSeq (a total of 52 Gbp raw reads).
Eutrema salsugineum	Brassicaceae	A relative of arabidopsis with high salt tolerance	240 Mbp	26,351		JGI	2013[90]
Eutrema parvulum	Brassicaceae	Comparative analysis of crucifer genomes					2013[80]
Leavenworthia alabamica	Brassicaceae	Comparative analysis of crucifer genomes					2013[80]
Sisymbrium irio	Brassicaceae	Comparative analysis of crucifer genomes					2013[80]
Thellungiella parvula	Brassicaceae	A relative of arabidopsis with high salt tolerance					2011[91]
Cannabis sativa (hemp)	Cannabaceae	Hemp and marijuana production	ca 820 Mbp	30,074 based on transcriptome assembly and clustering			2011[92]	Illumina/454 scaffold N50 16.2 Kbp
Carica papaya (papaya)	Caricaceae	Fruit crop	372 Mbp	28,629			2008[93]	contig N50 11kbp scaffold N50 1Mbp total coverage ~3x (Sanger) 92.1% unigenes mapped 235Mbp anchored (of this 161Mbp also oriented)
Casuarina equisetifolia (Australian Pine)	Casuarinaceae	bonsai subject	300 Mbp	29,827			2018[94]
Kalanchoë fedtschenkoi Raym.-Hamet & H. PerrierKalanchoe	Crassulaceae	Molecular genetic model for obligate CAM species in the eudicots	256 Mbp	30,964	34		2017[95]	~70× paired-end reads and ~37× mate-pair reads generated using an Illumina MiSeq platform.
Rhodiola crenulata (Tibetan medicinal herb)	Crassulaceae	Uses for medicine and food	344.5 Mb	35,517			2017[96]
Citrullus lanatus (watermelon)	Cucurbitaceae	Vegetable crop	ca 425 Mbp	23,440		BGI	2012[97]	Illumina coverage 108.6x contig N50 26.38 kbp Scaffold N50 2.38 Mbp genome covered 83.2% ~97% ESTs mapped
Cucumis melo (Muskmelon) DHL92	Cucurbitaceae	Vegetable crop	450 Mbp	27,427			2012[98]	454 13.5x coverage contig N50: 18.1kbp scaffold N50: 4.677 Mbp WGS
Cucumis sativus (cucumber) 'Chinese long' inbred line 9930	Cucurbitaceae	Vegetable crop	350 Mbp (Kmer depth) 367 Mbp (flow cytometry)	26,682			2009[99]	contig N50 19.8kbp scaffold N50 1,140kbp total coverage ~72.2 (Sanger + Ilumina) 96.8% unigenes mapped 72.8% of the genome anchored
Cucurbita argyrosperma (Silver-seed goud)	Cucurbitaceae	Vegetable crop	228.8 Mbp	28,298	20	National Autonomous University of Mexico	2019[100]	contig N50 463 kbp scaffold N50 620 kbp total coverage ~151x (PacBio + Illumina)
Siraitia grosvenorii (Monk fruit)	Cucurbitaceae	Chinese medicine/sweetener	456.5 Mbp	30,565		Anhui Agricultural University	2018[101]
Hevea brasiliensis (rubber tree)	Euphorbiaceae	the most economically important member of the genus Hevea					2013[102]
Jatropha curcas Palawan	Euphorbiaceae	bio-diesel crop					2011[103]
Manihot esculenta (Cassava)	Euphorbiaceae	Humanitarian importance	~760 Mb	30,666		JGI	2012[104]
Ricinus communis (Castor bean)	Euphorbiaceae	Oilseed crop	320 Mbp	31,237		JCVI	2010[105]	Sanger coverage~4.6x contig N50 21.1 kbp scaffold N50 496.5kbp
Ammopiptanthus nanus	Fabaceae	Only genus of evergreen broadleaf shrub	889 Mb	37,188			2018[106]
Cajanus cajan (Pigeon pea) var. Asha	Fabaceae	Model legume					2012[107][108]
Arachis duranensis (A genome diploid wild peanut) accession V14167	Fabaceae	Wild ancestor of peanut, an oilseed and grain legume crop					2016[109]	Illumina 154x coverage, contig N50 22 kbp, scaffold N50 948 kbp
Arachis ipaensis (B genome diploid wild peanut) accession K30076	Fabaceae	Wild ancestor of peanut, an oilseed and grain legume crop					2016[109]	Illumina 163x coverage, contig N50 23 kbp, scaffold N50 5,343 kbp
Cicer arietinum (chickpea)	Fabaceae	filling					2013[110]
Cicer arietinum L. (chickpea)	Fabaceae						2013[111]
Faidherbia albida (Apple-Ring Acacia)	Fabaceae	Importante in the Sahel for raising bees		28,979			2018[112][76]
Glycine max (soybean) var. Williams 82	Fabaceae	Protein and oil crop	1115 Mbp	46,430			2010[113]	Contig N50:189.4kbp Scaffold N50:47.8Mbp Sanger coverage ~8x WGS 955.1 Mbp assembled
Lablab purpureus (Hyacinth Bean)	Fabaceae	Crop for human consumption		20,946			2018[76][114]
Lotus japonicus (Bird's-foot Trefoil)	Fabaceae	Model legume					2008[115]
Medicago truncatula (Barrel Medic)	Fabaceae	Model legume					2011[116]
Phaseolus vulgaris (common bean)	Fabaceae	Model bean	520 Mbp	31,638		JGI	2013?[117]
Vigna subterranea (Bambara Groundnut)	Fabaceae	similar to peanuts		31,707			2018[118][76]
Castanea mollissima (Chinese chestnut)	Fagaceae	cultivated nut	785.53 Mb	36,479		Beijing University of Agriculture	2019[119]	Illumina: ∼42.7× PacBio: ∼87× contig N50: 944,000bp
Carya illinoinensis Pecan	Junglandaceae	snacks in various recipes	651.31 Mb				2019[120]
Juglans regia (Persian walnut)	Junglandaceae	cultivated nut	540 Mb			Chinese Academy of Forestry	2020[121]
Juglans sigillata (Iron walnut)	Junglandaceae	cultivated nut	536.50 Mb			Nanjing Forestry University	2020[122]	Illumina+Nanopore+bionano scaffold N50: 16.43 Mb, contig N50: 4.34 Mb
Linum usitatissimum (flax)	Linaceae	Crop	~350 Mbp	43,384		BGI et al.	2012[123]
Bombax ceiba (red silk cotton tree)	Malvaceae	capsules with white fibre like cotton	895 Mb				2018[124]
Durio zibethinus (Durian)	Malvaceae	Tropical fruit tree	~738 Mbp				2017[125]
Gossypium raimondii	Malvaceae	One of the putative progenitor species of tetraploid cotton					2013?[126]
Theobroma cacao (cocoa tree)	Malvaceae	Flavouring crop					2010[127][128]
Theobroma cacao (cocoa tree) cv. Matina 1-6	Malvaceae	Most widely cultivated cacao type					2013[129]
Theobroma cacao (200 accessions)	Malvaceae	domestication history of cacao					2018[130]
Azadirachta indica (neem)	Meliaceae	Source of number of Terpenoids, including biopesticide azadirachtin, Used in Traditional Medicine	364 Mbp	~20000		GANIT Labs	2012[131] and 2011[132]	Illumina GAIIx, scaffold N50 of 452028bp, Transcriptome data from Shoot, Root, Leaf, Flower and Seed
Moringa oleifera (Horseradish Tree)	Moringaceae	traditional herbal medicine		18,451			2018[133][76]
Eucalyptus grandis (Rose gum)	Myrtaceae	Fibre and timber crop	691.43 Mb				2011[134]
Eucalyptus pauciflora (Snow gum)	Myrtaceae	Fibre and timber crop	594.87 Mb			ANU	2020[135]	Nanopore + Illumina; contig N50: 3.23 Mb
C. cathayensis (Chinese hickory)	Rosaceae	fruit crop	706.43 Mb				2019[120]
Eriobotrya japonica (Loquat)	Rosaceae	Fruit tree	760.1 Mb	45,743		Shanghai Academy of Agricultural Sciences	2020[136]	Illumina+Nanopore+Hi-C 17 chromosomes, scaffold N50: 39.7 Mb
Fragaria vesca (wild strawberry)	Rosaceae	Fruit crop	240 Mbp	34,809			2011[137]	scaffold N50: 1.3 Mbp 454/Illumina/solid 39x coverage WGS
Malus domestica (apple) "Golden Delicious"	Rosaceae	Fruit crop	~742.3 Mbp	57,386			2010[138]	contig N50 13.4 (kbp??) scaffold N50 1,542.7 (kbp??) total coverage ~16.9x (Sanger + 454) 71.2% anchored
Prunus amygdalus (almond)	Rosaceae	Fruit crop					2013?[139]
Prunus avium (sweet cherry) cv. Stella	Rosaceae	Fruit crop					2013?[139]
Prunus mume (Chinese plum or Japanese apricot)	Rosaceae	Fruit crop					2012[140]
Prunus persica (peach)	Rosaceae	Fruit crop	265 Mbp	27,852			2013[141]	Sanger coverage:8.47x WGS ca 99% ESTs mapped 215.9 Mbp in pseudomolecules
Pyrus bretschneideri (ya pear or Chinese white pear) cv. Dangshansuli	Rosaceae	Fruit crop					2012[142]
Pyrus communis (European pear) cv. Doyenne du Comice	Rosaceae	Fruit crop					2013?[139]
Rubus occidentalis (Black raspberry)	Rosaceae	Fruit crop	290 Mbp				2018[143]
Citrus clementina (Clementine)	Rutaceae	Fruit crop					2013?[144]
Citrus sinensis (Sweet orange)	Rutaceae	Fruit crop					2013?,[144] 2013[145]
Populus trichocarpa (poplar)	Salicaceae	Carbon sequestration, model tree, timber	510 Mbp (cytogenetic) 485 Mbp (coverage)	73,013 [Phytozome]			2006[146]	Scaffold N50: 19.5 Mbp Contig N50:552.8 Kbp [phytozome] WGS >=95 % cDNA found
Populus pruinosa (desert tree)	Salicaceae	farming and rancing	479.3 Mbp	35,131			2017[147]
Acer yangbiense	Sapindaceae	Fruit crop	110 Gb	28,320			2019[148]
Dimocarpus longan (Longan)	Sapindaceae	Fruit crop	471.88 Mb				2017[149]
Xanthoceras sorbifolium Bunge (Yellowhorn)	Sapindaceae	Fruit Crop	504.2 Mb	24,672			2019[150][151]
Aquilaria sinensis (Agarwood)	Thymelaeaceae	Fragrant wood	726.5 Mb	29,203			2020[152]	Illumina+nanopore+Hi-C, scaffold N50: 88.78 Mb
Vitis vinifera (grape) genotype PN40024	Vitaceae	fruit crop					2007[153]

Asterids

Organism strain	Family	Relevance	Genome size	Number of genes predicted	Organization	Year of completion	Assembly status
Asclepias syriaca, (common milkweed)	Apocynaceae	Exudes milky latex	420 Mbp	14,474	Oregon State University	2019[154]	80.4× depth N50 = 3,415 bp
Erigeron breviscapus (Chinese herbal fleabane)	Asteraceae	Chinese medicine		37,505		2017[155]
Helianthus annuus (sunflower)	Asteraceae	Oil crop	3.6 Gbb	52,232	INRA and The Sunflower Genome Database[156]	2017[157]	N50 contig: 13.7 kb
Lactuca sativa (lettuce)	Asteraceae	Vegetable crop	2.5 Gbb	38,919		2017[158]	N50 contig: 12 kb; N50 scaffold: 476 kb
Handroanthus impetiginosus, Bignoniaceae (Pink Ipê)	Bignoniaceae	Common tree	503.7 Mb	31,668		2017[159]
Diospyros oleifera Cheng (Persimmon or Kaki)	Ebenaceae	Fruit tree	849.53 Mb	28,580	Zhejiang University & Chinese Academy of Forestry	2019[160] & 2020[161]	Two genomes both chromosome scale & assigned to 15 pseudochromosomes
Salvia miltiorrhiza Bunge (Chinese red sage)	Lamiaceae	TCM treatment for COPD	641 Mb	34,598		2015[162]
Mentha x piperita (Peppermint)	Lamiaceae	Oil crop	353 Mb	35,597	Oregon State University	2017[163]
Tectona grandis (Teak)	Lamiaceae	Durability and water resistance		31,168		2019[164]
Utricularia gibba (humped bladderwort)	Lentibulariaceae	model system for studying genome size evolution; a carnivorous plant	81.87 Mb	28,494	LANGEBIO, CINVESTAV	2013[165]	Scaffold N50: 80.839 Kb
Camptotheca acuminata Decne (Chinese happy tree)	Nyssaceae	chemical drugs for cancer treatment	403 Mb	31,825		2017[166]
Davidia involucrata Baill (Dove tree)	Nyssaceae	Living fossil	1,169 Mb	42,554		2020[167]
Mimulus guttatus	Phrymaceae	model system for studying ecological and evolutionary genetics	ca 430 Mbp	26,718	JGI	2013?[168]	Scaffold N50 = 1.1 Mbp Contig N50 = 45.5 Kbp
Primula vulgaris (Common primrose)	Primulaceae	Used for cooking	474 Mb			2018[169]
Solanum lycopersicum (tomato) cv. Heinz 1706	Solanaceae	Food crop	ca 900 Mbp	34,727	SGN	2011[170] 2012[171]	Sanger/454/Illumina/Solid Pseudomolecules spanning 91 scaffolds (760Mbp of which 594Mbp have been oriented ) over 98% ESTs mappable
Solanum aethiopicum (Ethiopian eggplant)	Solanaceae	Food crop	1.02 Gbp	34,906	BGI	2019[172]	Illumina scaffold N50: 516,100bp contig N50: 25,200 bp ∼109× coverage
Solanum pimpinellifolium (Currant Tomato)	Solanaceae	closest wild relative to tomato				2012[171]	Illumina contig N50: 5100bp ~40x coverage
Solanum tuberosum (Potato)	Solanaceae	Food crop	726 Mbp[173]	39,031	Potato Genome Sequencing Consortium (PGSC)	2011[174][175]	Sanger/454/Illumina 79.2x coverage contig N50: 31,429bp scaffold N50: 1,318,511bp
Solanum commersonii (commerson's nightshade)	Solanaceae	Wild potato relative	838 Mbp kmer (840 Mbp)	37,662	UNINA, UMN, UNIVR, Sequentia Biotech, CGR	2015[176]	Illumina 105x coverage contig N50: 6,506bp scaffold N50: 44,298bp
Cuscuta campestris (field dodder)	Solanaceae	model system for parasitic plants	556 Mbp kmer (581 Mbp)	44,303	RWTH Aachen University, Research Center Jülich, UiT The Arctic University of Norway, Helmholtz Zentrum München, Technical University Munich, University of Vienna	2018[177]	scaffold N50 = 1.38 Mbp
Cuscuta australis (Southern dodder)	Solanaceae	model system for parasitic plants	265 Mbp kmer (273 Mbp)	19,671	Kunming Institute of Botany, Chinese Academy of Sciences	2018[178]	scaffold N50 = 5.95 Mbp contig N50 = 3.63 Mbp
Nicotiana benthamiana	Solanaceae	Close relative of tobacco	ca 3 Gbp			2012[179]	Illumina 63x coverage contig N50: 16,480bp scaffold N50:89,778bp >93% unigenes found
Nicotiana sylvestris (Tobacco plant)	Solanaceae	model system for studies of terpenoid production	2.636 Gbp		Philip Morris International	2013[180]	94x coverage scaffold N50: 79.7 kbp 194kbp superscaffolds using physical Nicotiana map
Nicotiana tomentosiformis	Solanaceae	Tobacco progenitor	2.682 Gb		Philip Morris International	2013[180]	146x coverage scaffold N50: 82.6 kb 166kbp superscaffolds using physical Nicotiana map
Capsicum annuum (Pepper) (a) cv. CM334 (b) cv. Zunla-1	Solanaceae	Food crop	~3.48 Gbp	(a) 34,903 (b) 35,336		(a) 2014[181] (b) 2014[182]	N50 contig: (a) 30.0 kb (b) 55.4 kb N50 scaffold: (a) 2.47 Mb (b) 1.23 Mb
Capsicum annuum var. glabriusculum (Chiltepin)	Solanaceae	Progenitor of cultivated pepper	~3.48 Gbp	34,476		2014[182]	N50 contig: 52.2 kb N50 scaffold: 0.45 Mb
Petunia hybrida	Solanaceae	Economically important flower				2011[183]

Monocots

Grasses

Organism strain	Family	Relevance	Genome size	Number of genes predicted	Organization	Year of completion	Assembly status
Setaria italica (Foxtail millet)	Poaceae	Model of C4 metabolism				2012[184]
Aegilops tauschii (Tausch's goatgrass)	Poaceae	bread wheat D-genome progenitor	ca 4.36 Gb	39,622		2017[185]	pseudomolecule assembly
Brachypodium distachyon (purple false brome)	Poaceae	Model monocot				2010[186]
Coix lacryma-jobi L. (Job's tears)	Poaceae	Crop & used in medicine & ornamentation	1.619 Gb	39,629		2019[187]
Dichanthelium oligosanthes (Heller's rosette grass)	Poaceae	C3 grass closely related to C4 species	960 Mb		DDPSC	2016[188]
Eragrostis curvula	Poaceae	good for livestock	43.31 Mb	56,469		2019[189]
Hordeum vulgare (barley)	Poaceae	Model of ecological adoption			IBSC	2012,[190] 2017[191]
Oryza brachyantha (wild rice)	Poaceae	Disease resistant wild relative of rice				2013[192]
Oryza glaberrima (African rice) var CG14	Poaceae	West-African species of rice				2010[193]
Oryza rufipogon (red rice)	Poaceae	Ancestor to Oryza sativa	406 Mb	37,071	SIBS	2012[194]	Illumina HiSeq2000 100x coverage
Oryza sativa (long grain rice) ssp indica	Poaceae	Crop and model cereal	430 Mb[195]		International Rice Genome Sequencing Project (IRGSP)	2002[196]
Oryza sativa (Short grain rice) ssp japonica	Poaceae	Crop and model cereal	430 Mb		International Rice Genome Sequencing Project (IRGSP)	2002[197]
Panicum virgatum (switchgrass)	Poaceae	biofuel				2013?[198]
Phyllostachys edulis (moso bamboo)	Poaceae	Bamboo textile industry	79.90 Mb	25,225		2013[199] 2018[200]
Sorghum bicolor genotype BTx623	Poaceae	Crop	ca 730 Mb	34,496		2009[201]	contig N50:195.4kbp scaffold N50: 62.4Mbp Sanger, 8.5x coverage WGS
Triticum aestivum (bread wheat)	Poaceae	20% of global nutrition	14.5 Gb	107,891	IWGSC	2018[202]	pseudomolecule assembly
Triticum urartu	Poaceae	Bread wheat A-genome progenitor	ca 4.94 Gb		BGI	2013[203]	Non-repetitive sequence assembled Illumina WGS
Zea mays (maize) ssp mays B73	Poaceae	Cereal crop	2.3 Gb	39,656[204]		2009[205]	contig N50 40kbp scaffold N50: 76kbp Sanger, 4-6x coverage per BAC
Pennisetum glaucum (pearl millet)	Poaceae	Subsaharian and Sahelian millet species	~1,79 Gb	38,579		2017[206]	WGS and bacterial artificial chromosome (BAC) sequencing

Other non-grasses

Organism strain	Family	Relevance	Genome size	Number of genes predicted	No of chromosomes	Organization	Year of completion	Assembly status
Ananas bracteatus accession CB5	Bromeliaceae	Wild pineapple relative	382 Mbp	27,024	25		2015[207]	100× coverage using Illumina paired-end reads of libraries with different insert sizes.
Ananas comosus (L.) Merr. (Pineapple), varieties F153 and MD2	Bromeliaceae	The most economically valuable crop possessing crassulacean acid metabolism (CAM)	382 Mb	27,024	25		2015[207]	400× Illumina reads, 2× Moleculo synthetic long reads, 1× 454 reads, 5× PacBio single-molecule long reads and 9,400 BACs.
Musa acuminata (Banana)	Musaceae	A-genome of modern banana cultivars	523 Mbp	36,542			2012[208]	N50 contig: 43.1 kb N50 scaffold: 1.3 Mb
Musa balbisiana (Wild banana)	Musaceae	B-genome of modern banana cultivars	438 Mbp	36,638			2013[209]	N50 contig: 7.9 kb
Calamus simplicifolius	Arecaceae	native to tropical and subtropical regions	1.98 Gb	51,235			2018[210]
Cocos nucifera (Coconut palm)	Arecaceae	used in food and cosmetics	419.67 Gb				2017[211]
Daemonorops jenkinsiana	Arecaceae	native to tropical and subtropical regions.	1.61 Gb	52,342			2018[210]
Phoenix dactylifera (Date palm)	Arecaceae	Woody crop in arid regions	658 Mbp	28,800			2011[212]	N50 contig: 6.4 kb
Elaeis guineensis (African oil palm)	Arecaceae	Oil-bearing crop	~1800 Mbp	34,800			2013[213]	N50 scaffold: 1.27 Mb
Spirodela polyrhiza (Greater duckweed)	Araceae	Aquatic plant	158 Mbp	19,623			2014[214]	N50 scaffold: 3.76 Mb
Phalaenopsis equestris (Schauer) Rchb.f. (Moth orchid)	Orchidaceae	Breeding parent of many modern moth orchid cultivars and hybrids. Plant with crassulacean acid metabolism (CAM).	1600 Mbp	29,431			2014[215]	N50 scaffold: 359,115 kb

Press releases announcing sequencing

Not meeting criteria of the first paragraph of this article in being nearly full sequences with high quality, published, assembled and publicly available. This list includes species where sequences are announced in press releases or websites, but not in a data-rich publication in a refereed peer-review journal with DOI.

• Corchorus olitorius (Jute mallow), fibre plant 2017[216][217]
• Corchorus capsularis 2017[216]
• Fraxinus excelsior, European ash (2013 draft[218][219])

See also

• List of sequenced eukaryotic genomes
• List of sequenced animal genomes
• List of sequenced archaeal genomes
• List of sequenced bacterial genomes
• List of sequenced fungi genomes
• List of sequenced plastomes
• List of sequenced protist genomes

External links

• http://plabipd.de/timeline_view.ep
• http://genomevolution.org/wiki/index.php/Sequenced_plant_genomes
• https://phytozome.jgi.doe.gov/pz/portal.html
• https://bioinformatics.psb.ugent.be/plaza/

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