Retinal

Retinal, also known as retinaldehyde, is a form of vitamin A. It was originally called retinene,[2] and renamed[3] after it was discovered to be vitamin A aldehyde.[4][5] Retinal is one of the many forms of vitamin A (the number of which varies from species to species). Retinal is a polyene chromophore, bound to proteins called opsins, and is the chemical basis of animal vision. Retinal allows certain microorganisms to convert light into metabolic energy.

Not to be confused with Retinol.
This article is about the molecule. For matters pertaining to the anatomical feature, see Retina.
All-trans-retinal
Names
IUPAC name
(2E,4E,6E,8E)-3,7-Dimethyl-9-(2,6,6-trimethylcyclohexen-1-yl)nona-2,4,6,8-tetraenal
Other names
  • Retinene
  • Retinaldehyde
  • Vitamin A aldehyde
  • RAL
Identifiers
3D model (JSmol)
ChemSpider
ECHA InfoCard 100.003.760
UNII
Properties
C20H28O
Molar mass 284.443 g·mol−1
Appearance Orange crystals from petroleum ether[1]
Melting point 61 to 64 °C (142 to 147 °F; 334 to 337 K)[1]
Nearly insoluble
Solubility in fat Soluble
Related compounds
Related compounds
 retinol; retinoic acid; beta-carotene; dehydroretinal; 3-hydroxyretinal; 4-hydroxyretinal
Except where otherwise noted, data are given for materials in their standard state (at 25 °C [77 °F], 100 kPa).
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Infobox references

Vertebrate animals ingest retinal directly from meat, or they produce retinal from carotenoids, either from one of two carotenes (α-carotene, β-carotene) or from β-cryptoxanthin, a type of xanthophyll. These carotenoids must be obtained from plants or other photosynthetic organisms. No other carotenoids can be converted by animals to retinal, and some carnivores cannot convert any carotenoids at all. The other main forms of vitamin A, retinol, and a partially active form, retinoic acid, may both be produced from retinal.

Invertebrates such as insects and squid use hydroxylated forms of retinal in their visual systems, which derive from conversion from other xanthophylls.

Vitamin A metabolism

Living organisms produce retinal (RAL) by irreversible oxidative cleavage of carotenoids.[6] For example,

beta-carotene + O2 → 2 retinal

catalyzed by a beta-carotene 15,15'-monooxygenase[7] or a beta-carotene 15,15'-dioxygenase.[8] Just as carotenoids are the precursors of retinal, retinal is the precursor of the other forms of vitamin A. Retinal is interconvertible with retinol (ROL), the transport and storage form of vitamin A

retinal + NADPH + H+ ⇌ retinol + NADP+
retinol + NAD+ ⇌ retinal + NADH + H+

catalyzed by retinol dehydrogenases (RDHs)[9] and alcohol dehydrogenases (ADHs).[10] Retinol is called vitamin A alcohol, or more often, simply vitamin A. Retinal can also be oxidized to retinoic acid (RA)

retinal + NAD+ + H2O → retinoic acid + NADH + H+ (catalyzed by RALDH)
retinal + O2 + H2O → retinoic acid + H2O2 (catalyzed by retinal oxidase)

catalyzed by retinal dehydrogenases[11] also known as retinaldehyde dehydrogenases (RALDHs)[10] as well as retinal oxidases.[12] Retinoic acid, sometimes called vitamin A acid, is an important signaling molecule and hormone in vertebrate animals.

Vision

Retinal is a conjugated chromophore. In the human eye, retinal begins in an 11-cis-retinal configuration, which, upon capturing a photon of the correct wavelength, straightens out into an all-trans-retinal configuration. This configuration change pushes against an opsin protein in the retina, which triggers a chemical signaling cascade which can result in perception of light or images by the human brain. The absorbance spectrum of the chromophore depends on its interactions with the opsin protein to which it is bound, so that different retinal-opsin complexes will absorb photons of different wavelengths (different colors of light).

Opsins
An opsin protein surrounds a molecule of retinal, awaiting detection of a photon. Once retinal captures a photon, retinal's configuration change pushes against the surrounding opsin protein. Opsin may send a chemical signal to the human brain signaling that light has been detected. Retinal is then reloaded into its 11-cis configuration by ATP phosphorylation and the cycle begins again.
Animal GPCR rhodopsin (rainbow colored) embedded in a lipid bilayer (heads red and tails blue) with transducin below it. Gtα is colored red, Gtβ blue, and Gtγ yellow. There is a bound GDP molecule in the Gtα-subunit and a bound retinal (black) in the rhodopsin. The N-terminus terminus of rhodopsin is red and the C-terminus blue. Anchoring of transducin to the membrane has been drawn in black.

Opsins are proteins and the retinal-binding visual pigments found in the photoreceptor cells in the retinas of eyes. An opsin is arranged into a bundle of seven transmembrane alpha-helices connected by six loops. In rod cells the opsin molecules are embedded in the membranes of the disks which are entirely inside of the cell. The N-terminus head of the molecule extends into the interior of the disk, and the C-terminus tail extends into the cytoplasm of the cell. In cone cells the disks are defined by the cell's plasma membrane so that the N-terminus head extends outside of the cell. Retinal binds covalently to a lysine on the transmembrane helix nearest the C-terminus of the protein through a Schiff base linkage. Formation of the Schiff base linkage involves removing the oxygen atom from retinal and two hydrogen atoms from the free amino group of lysine, giving H2O. Retinylidene is the divalent group formed by removing the oxygen atom from retinal, and so opsins have been called retinylidene proteins.

Opsins are prototypical G protein-coupled receptors (GPCRs).[13] Bovine rhodopsin, the opsin of the rod cells of cattle, was the first GPCR to have its X-ray structure determined.[14] Bovine rhodopsin contains 348 amino acid residues. The retinal chromophore binds at Lys296.

Although mammals use retinal exclusively as the opsin chromophore, other groups of animals additionally use four chromophores closely related to retinal. These are 3,4-didehydroretinal (vitamin A2), (3R)-3-hydroxyretinal, (3S)-3-hydroxyretinal (both vitamin A3), and (4R)-4-hydroxyretinal (vitamin A4). Many fish and amphibians use 3,4-didehydroretinal, also called dehydroretinal. With the exception of the dipteran suborder Cyclorrhapha, the so-called higher flies, all insects examined use the (R)-enantiomer of 3-hydroxyretinal. The (R)-enantiomer is to be expected if 3-hydroxyretinal is produced directly from xanthophyll carotenoids. Cyclorrhaphans, including Drosophila, use (3S)-3-hydroxyretinal.[15][16] Firefly squid have been found to use (4R)-4-hydroxyretinal.

Visual cycle
Visual cycle
See also: Rhodopsin § Structure

The visual cycle is a circular enzymatic pathway, which is the front-end of phototransduction. It regenerates 11-cis-retinal. For example, the visual cycle of mammalian rod cells is as follows:

  1. all-trans-retinyl ester + H2O → 11-cis-retinol + fatty acid; RPE65 isomerohydrolases,[17]
  2. 11-cis-retinol + NAD+ → 11-cis-retinal + NADH + H+; 11-cis-retinol dehydrogenases,
  3. 11-cis-retinal + aporhodopsin → rhodopsin + H2O; forms Schiff base linkage to lysine, -CH=N+H-,
  4. rhodopsin + hν → metarhodopsin II, i.e. 11-cis photoisomerizes to all-trans,
    rhodopsin + hν → photorhodopsin → bathorhodopsin → lumirhodopsin → metarhodopsin I → metarhodopsin II,
  5. metarhodopsin II + H2O → aporhodopsin + all-trans-retinal,
  6. all-trans-retinal + NADPH + H+ → all-trans-retinol + NADP+; all-trans-retinol dehydrogenases,
  7. all-trans-retinol + fatty acid → all-trans-retinyl ester + H2O; lecithin retinol acyltransferases (LRATs).[18]

Steps 3,4,5,6 occur in rod cell outer segments; Steps 1, 2, and 7 occur in retinal pigment epithelium (RPE) cells.

RPE65 isomerohydrolases are homologous with beta-carotene monooxygenases;[6] the homologous ninaB enzyme in Drosophila has both retinal-forming carotenoid-oxygenase activity and all-trans to 11-cis isomerase activity.[19]

Microbial rhodopsins
Main article: Microbial rhodopsin

All-trans-retinal is also an essential component of microbial, opsins such as bacteriorhodopsin, channelrhodopsin, and halorhodopsin. In these molecules, light causes the all-trans-retinal to become 13-cis retinal, which then cycles back to all-trans-retinal in the dark state. These proteins are not evolutionarily related to animal opsins and are not GPCRs; the fact that they both use retinal is a result of convergent evolution.[20]

History

The American biochemist George Wald and others had outlined the visual cycle by 1958. For his work, Wald won a share of the 1967 Nobel Prize in Physiology or Medicine with Haldan Keffer Hartline and Ragnar Granit.[21]

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gollark: I don't go over 16³ generally because the cells are costly and the RF use is horrible.
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gollark: CodersNet, it's a small one for the CC community.
gollark: Here's a picture of me capturing it.

See also

References
  1. Merck Index, 13th Edition, 8249
  2. WALD, GEORGE (14 July 1934). "Carotenoids and the Vitamin A Cycle in Vision". Nature. 134 (3376): 65. Bibcode:1934Natur.134...65W. doi:10.1038/134065a0.
  3. Wald, G (11 October 1968). "Molecular basis of visual excitation". Science. 162 (3850): 230–9. Bibcode:1968Sci...162..230W. doi:10.1126/science.162.3850.230. PMID 4877437.
  4. MORTON, R. A.; GOODWIN, T. W. (1 April 1944). "Preparation of Retinene in Vitro". Nature. 153 (3883): 405–406. Bibcode:1944Natur.153..405M. doi:10.1038/153405a0.
  5. BALL, S; GOODWIN, TW; MORTON, RA (1946). "Retinene1-vitamin A aldehyde". The Biochemical Journal. 40 (5–6): lix. PMID 20341217.
  6. von Lintig, Johannes; Vogt, Klaus (2000). "Filling the Gap in Vitamin A Research: Molecular Identification of An Enzyme Cleaving Beta-carotene to Retinal". Journal of Biological Chemistry. 275 (16): 11915–11920. doi:10.1074/jbc.275.16.11915. PMID 10766819.
  7. Woggon, Wolf-D. (2002). "Oxidative cleavage of carotenoids catalyzed by enzyme models and beta-carotene 15,15´-monooxygenase". Pure and Applied Chemistry. 74 (8): 1397–1408. doi:10.1351/pac200274081397.
  8. Kim, Yeong-Su; Kim, Nam-Hee; Yeom, Soo-Jin; Kim, Seon-Won; Oh, Deok-Kun (2009). "In Vitro Characterization of a Recombinant Blh Protein from an Uncultured Marine Bacterium as a β-Carotene 15,15′-Dioxygenase". Journal of Biological Chemistry. 284 (23): 15781–93. doi:10.1074/jbc.M109.002618. PMC 2708875. PMID 19366683.
  9. Lidén, Martin; Eriksson, Ulf (2006). "Understanding Retinol Metabolism: Structure and Function of Retinol Dehydrogenases". Journal of Biological Chemistry. 281 (19): 13001–13004. doi:10.1074/jbc.R500027200. PMID 16428379.
  10. Duester, G (September 2008). "Retinoic Acid Synthesis and Signaling during Early Organogenesis". Cell. 134 (6): 921–31. doi:10.1016/j.cell.2008.09.002. PMC 2632951. PMID 18805086.
  11. Lin, Min; Zhang, Min; Abraham, Michael; Smith, Susan M.; Napoli, Joseph L. (2003). "Mouse Retinal Dehydrogenase 4 (RALDH4), Molecular Cloning, Cellular Expression, and Activity in 9-cis-Retinoic Acid Biosynthesis in Intact Cells". Journal of Biological Chemistry. 278 (11): 9856–9861. doi:10.1074/jbc.M211417200. PMID 12519776.
  12. "KEGG ENZYME: 1.2.3.11 retinal oxidase". Retrieved 2009-03-10.
  13. Lamb, T D (1996). "Gain and kinetics of activation in the G-protein cascade of phototransduction". Proceedings of the National Academy of Sciences. 93 (2): 566–570. Bibcode:1996PNAS...93..566L. doi:10.1073/pnas.93.2.566. PMC 40092. PMID 8570596.
  14. Palczewski, Krzysztof; Kumasaka, Takashi; Hori, T; Behnke, CA; Motoshima, H; Fox, BA; Le Trong, I; Teller, DC; et al. (2000). "Crystal Structure of Rhodopsin: A G Protein-Coupled Receptor". Science. 289 (5480): 739–745. Bibcode:2000Sci...289..739P. CiteSeerX 10.1.1.1012.2275. doi:10.1126/science.289.5480.739. PMID 10926528.
  15. Seki, Takaharu; Isono, Kunio; Ito, Masayoshi; Katsuta, Yuko (1994). "Flies in the Group Cyclorrhapha Use (3S)-3-Hydroxyretinal as a Unique Visual Pigment Chromophore". European Journal of Biochemistry. 226 (2): 691–696. doi:10.1111/j.1432-1033.1994.tb20097.x. PMID 8001586.
  16. Seki, Takaharu; Isono, Kunio; Ozaki, Kaoru; Tsukahara, Yasuo; Shibata-Katsuta, Yuko; Ito, Masayoshi; Irie, Toshiaki; Katagiri, Masanao (1998). "The metabolic pathway of visual pigment chromophore formation in Drosophila melanogaster: All-trans (3S)-3-hydroxyretinal is formed from all-trans retinal via (3R)-3-hydroxyretinal in the dark". European Journal of Biochemistry. 257 (2): 522–527. doi:10.1046/j.1432-1327.1998.2570522.x. PMID 9826202.
  17. Moiseyev, Gennadiy; Chen, Ying; Takahashi, Yusuke; Wu, Bill X.; Ma, Jian-xing (2005). "RPE65 is the isomerohydrolase in the retinoid visual cycle". Proceedings of the National Academy of Sciences. 102 (35): 12413–12418. Bibcode:2005PNAS..10212413M. doi:10.1073/pnas.0503460102. PMC 1194921. PMID 16116091.
  18. Jin, Minghao; Yuan, Quan; Li, Songhua; Travis, Gabriel H. (2007). "Role of LRAT on the Retinoid Isomerase Activity and Membrane Association of Rpe65". Journal of Biological Chemistry. 282 (29): 20915–20924. doi:10.1074/jbc.M701432200. PMC 2747659. PMID 17504753.
  19. Oberhauser, Vitus; Voolstra, Olaf; Bangert, Annette; von Lintig, Johannes; Vogt, Klaus (2008). "NinaB combines carotenoid oxygenase and retinoid isomerase activity in a single polypeptide". Proceedings of the National Academy of Sciences. 105 (48): 19000–5. Bibcode:2008PNAS..10519000O. doi:10.1073/pnas.0807805105. PMC 2596218. PMID 19020100.
  20. Chen, De-Liang; Wang, Guang-yu; Xu, Bing; Hu, Kun-Sheng (2002). "All-trans to 13-cis retinal isomerization in light-adapted bacteriorhodopsin at acidic pH". Journal of Photochemistry and Photobiology B: Biology. 66 (3): 188–194. doi:10.1016/S1011-1344(02)00245-2. PMID 11960728.
  21. 1967 Nobel Prize in Medicine

Further reading
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