Arabinose

Arabinose
Names
	IUPAC name Arabinose
	Other names Pectinose
Identifiers
CAS Number	147-81-9 ; 10323-20-3 (D) ; 5328-37-0 (L) ;
3D model (JSmol)	Interactive image; Interactive image;
ChEBI	CHEBI:46983 ;
ChemSpider	59687 ;
EC Number	205-699-8;
PubChem CID	5460291;
UNII	509X20752R ; F0W6ETZ4E5 (D) ; B40ROO395Z (L) ;
	InChI InChI=1S/C5H10O5/c6-1-3(8)5(10)4(9)2-7/h1,3-5,7-10H,2H2/t3-,4-,5+/m1/s1 Key: PYMYPHUHKUWMLA-WDCZJNDASA-N ; InChI=1/C5H10O5/c6-1-3(8)5(10)4(9)2-7/h1,3-5,7-10H,2H2/t3-,4-,5+/m1/s1 Key: PYMYPHUHKUWMLA-WDCZJNDABW;
	SMILES O=C[C@@H](O)[C@H](O)[C@H](O)CO; C([C@H]([C@H]([C@@H](C=O)O)O)O)O;
Properties[1]
Chemical formula	C5H10O5
Molar mass	150.13 g/mol
Appearance	Colorless crystals as prisms or needles
Density	1.585 g/cm3 (20 ºC)
Melting point	164 to 165 °C (327 to 329 °F; 437 to 438 K)
Solubility in water	834 g/1 L (25 °C (77 °F))
Magnetic susceptibility (χ)	-85.70·10−6 cm3/mol
Hazards
NFPA 704 (fire diamond)	1 1 0
Related compounds
Related aldopentoses	Ribose; Xylose; Lyxose
	Except where otherwise noted, data are given for materials in their standard state (at 25 °C [77 °F], 100 kPa).
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	Infobox references

Arabinose is an aldopentose – a monosaccharide containing five carbon atoms, and including an aldehyde (CHO) functional group.

For biosynthetic reasons, most saccharides are almost always more abundant in nature as the "D"-form, or structurally analogous to D-glyceraldehyde.[note 1] However, L-arabinose is in fact more common than D-arabinose in nature and is found in nature as a component of biopolymers such as hemicellulose and pectin.[2]

The L-arabinose operon, also known as the araBAD operon, has been the subject of much biomolecular research. The operon directs the catabolism of arabinose in E. coli, and it is dynamically activated in the presence of arabinose and the absence of glucose.[3]

A classic method for the organic synthesis of arabinose from glucose is the Wohl degradation.[4]

D-Arabinose
α-D-Arabinofuranose	β-D-Arabinofuranose
α-D-Arabinopyranose	β-D-Arabinopyranose

Etymology

Arabinose gets its name from gum arabic, from which it was first isolated.[5]

Use in biology

In synthetic biology, arabinose is often used as a one-way or reversible switch for protein expression under the P_bad promoter in E. coli. This on-switch can be negated by the presence of glucose or reversed off by the addition of glucose in the culture medium which is a form of catabolite repression.[6]

Some organic acid tests check for the presence of arabinose, which may indicate overgrowth of intestinal yeast such as Candida albicans or other yeast/fungus species.

Use in foods

Originally commercialized as a sweetener, arabinose is an inhibitor of sucrase, the enzyme that breaks down sucrose into glucose and fructose in the small intestine.[7]

gollark: Although the `mmap` call doesn't appear to magically fix everything.

gollark: See, it catches it, the handler handles it handlefully.

gollark: See?

gollark: ```c#include <stdio.h>#include <signal.h>#include <string.h>#include <stdlib.h>#include <sys/mman.h>static void handler(int sig, siginfo_t *info, void *literally_bee) { printf("oh bee oh apio segfault %08x\n", info->si_addr); mmap(info->si_addr, 0x10000, PROT_NONE, MAP_ANONYMOUS|MAP_FIXED, -1, 0); exit(1);}int main() { struct sigaction sa; sigemptyset(&sa.sa_mask); sa.sa_flags = SA_NODEFER; sa.sa_sigaction = handler; sigaction(SIGSEGV, &sa, NULL); *(int*)NULL = -3; printf("thing done\n"); return 0;}```

gollark: I checked and I can, in fact, catch SIGSEGVs.

Notes

The D/L nomenclature does not refer to the molecule's optical rotation properties but to its structural analogy to glyceraldehyde.

References

Weast, Robert C., ed. (1981). CRC Handbook of Chemistry and Physics (62nd ed.). Boca Raton, FL: CRC Press. p. C-110. ISBN 0-8493-0462-8.
Holtzapple, M.T. (2003). HEMICELLULOSES. Encyclopedia of Food Sciences and Nutrition. pp. 3060–3071. doi:10.1016/B0-12-227055-X/00589-7. ISBN 9780122270550.
Watson, James (2003). Molecular Biology of the Gene. p. 503.
Braun, Géza (1940). "D-Arabinose". Organic Syntheses. 20: 14.; Collective Volume, 3, p. 101
Merriam Webster Dictionary
Guzman LM, Belin D, Carson MJ, Beckwith J (July 1995). "Tight regulation, modulation, and high-level expression by vectors containing the arabinose PBAD promoter". J. Bacteriol. 177 (14): 4121–30. CiteSeerX 10.1.1.629.9409. doi:10.1128/jb.177.14.4121-4130.1995. PMC 177145. PMID 7608087.
Krog-Mikkelsen, Inger; Hels, Ole; Tetens, Inge; Holst, Jens Juul; Andersen, Jens Rikardt; Bukhave, Klaus (2011-08-01). "The effects of L-arabinose on intestinal sucrase activity: dose-response studies in vitro and in humans". The American Journal of Clinical Nutrition. 94 (2): 472–478. doi:10.3945/ajcn.111.014225. ISSN 1938-3207. PMID 21677059.

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[2] The D/L nomenclature does not refer to the molecule's optical rotation properties but to its structural analogy to glyceraldehyde.

[1] Weast, Robert C., ed. (1981). CRC Handbook of Chemistry and Physics (62nd ed.). Boca Raton, FL: CRC Press. p. C-110. ISBN 0-8493-0462-8.

[3] Holtzapple, M.T. (2003). HEMICELLULOSES. Encyclopedia of Food Sciences and Nutrition. pp. 3060–3071. doi:10.1016/B0-12-227055-X/00589-7. ISBN 9780122270550.

[4] Watson, James (2003). Molecular Biology of the Gene. p. 503.

[5] Braun, Géza (1940). "D-Arabinose". Organic Syntheses. 20: 14.; Collective Volume, 3, p. 101

[6] Merriam Webster Dictionary

[7] Guzman LM, Belin D, Carson MJ, Beckwith J (July 1995). "Tight regulation, modulation, and high-level expression by vectors containing the arabinose PBAD promoter". J. Bacteriol. 177 (14): 4121–30. CiteSeerX 10.1.1.629.9409. doi:10.1128/jb.177.14.4121-4130.1995. PMC 177145. PMID 7608087.

[:0-8] Krog-Mikkelsen, Inger; Hels, Ole; Tetens, Inge; Holst, Jens Juul; Andersen, Jens Rikardt; Bukhave, Klaus (2011-08-01). "The effects of L-arabinose on intestinal sucrase activity: dose-response studies in vitro and in humans". The American Journal of Clinical Nutrition. 94 (2): 472–478. doi:10.3945/ajcn.111.014225. ISSN 1938-3207. PMID 21677059.