Rickettsia

Rickettsia is a genus of nonmotile, Gram-negative, nonspore-forming, highly pleomorphic bacteria that may occur in the forms of cocci (0.1 μm in diameter), bacilli (1–4 μm long), or threads (up to about 10 μm long). The term "rickettsia" has nothing to do with rickets (which is a deficiency disease resulting from lack of vitamin D); the bacterial genus Rickettsia was named after Howard Taylor Ricketts, in honour of his pioneering work on tick-borne spotted fever.

Rickettsia
Red-stained Rickettsia rickettsii visible in cells of an Ixodid vector tick
Scientific classification
Domain: Bacteria
Phylum: Proteobacteria
Class: Alphaproteobacteria
Order: Rickettsiales
Family: Rickettsiaceae
Tribe: Rickettsieae
Genus: Rickettsia
da Rocha-Lima, 1916
Species groups and Species[1]

Properly, Rickettsia is the name of a single genus, but the informal term "rickettsia", plural "rickettsias", usually not capitalised, commonly applies to any members of the order Rickettsiales. Being obligate intracellular parasites, rickettsias depend on entry, growth, and replication within the cytoplasm of living eukaryotic host cells (typically endothelial cells).[9] Accordingly, Rickettsia species cannot grow in artificial nutrient culture; they must be grown either in tissue or embryo cultures; typically, chicken embryos are used, following a method developed by Ernest William Goodpasture and his colleagues at Vanderbilt University in the early 1930s.

Rickettsia species are transmitted by numerous types of arthropod, including chigger, ticks, fleas, and lice, and are associated with both human and plant diseases.[10] Most notably, Rickettsia species are the pathogens responsible for typhus, rickettsialpox, boutonneuse fever, African tick-bite fever, Rocky Mountain spotted fever, Flinders Island spotted fever, and Queensland tick typhus (Australian tick typhus).[11] The majority of Rickettsia bacteria are susceptible to antibiotics of the tetracycline group.

Classification

The classification of Rickettsia into three groups (spotted fever, typhus, and scrub typhus) was initially based on serology. This grouping has since been confirmed by DNA sequencing. All three of these groups include human pathogens. The scrub typhus group has been reclassified as a related new genus, Orientia, but they still are in the order Rickettsiales and accordingly still are grouped with the rest of the rickettsial diseases.

Rickettsias are more widespread than previously believed and are known to be associated with arthropods, leeches, and protists. Divisions have also been identified in the spotted fever group and this group likely should be divided into two clades.[12] Arthropod-inhabiting rickettsiae are generally associated with reproductive manipulation (such as parthenogenesis) to persist in host lineage[10]

In March 2010, Swedish researchers reported a case of bacterial meningitis in a woman caused by Rickettsia helvetica previously thought to be harmless.[13]

Spotted fever group
Rocky Mountain spotted fever
Rickettsialpox
Boutonneuse fever
Siberian tick typhus or North Asian tick typhus
Australian tick typhus
Flea-borne spotted fever
Oriental spotted fever
African tick bite fever
  • Rickettsia hoogstraalii (Croatia, Spain and Georgia USA)[14]
Unknown pathogenicity

Typhus group
Epidemic typhus, recrudescent typhus, and sporadic typhus
Murine typhus (endemic typhus)

Scrub typhus group
  • The causative agent of scrub typhus formerly known as R. tsutsugamushi has been reclassified into the genus Orientia.
Schematic ribosomal RNA phylogeny of Alphaproteobacteria
  Magnetococcidae  

  Magnetococcus marinus

 
 
  Caulobacteridae  
 

  Rhodospirillales, Sphingomonadales,
  Rhodobacteraceae, Rhizobiales, etc.

 
 

  Holosporales

 
 
  Rickettsidae  
  Pelagibacterales  
  Pelagibacteraceae  
 

  Pelagibacter

 
 
 

  Subgroups Ib, II, IIIa, IIIb, IV and V

 
 
  Rickettsiales  
 

  Proto-mitochondria

 
 
  Anaplasmataceae  
 
 
 

  Ehrlichia

 
 

  Anaplasma

 
 
 

  Wolbachia

 
 
 

  Neorickettsia

 
 
 
  Midichloriaceae  
 

  Midichloria

 
 
  Rickettsiaceae  
 

  Rickettsia

 
 

  Orientia

 
 
 
 
 
 
 
The cladogram of Rickettsidae has been inferred by Ferla et al. [15] from the comparison of 16S + 23S ribosomal RNA sequences.

Flora and fauna pathogenesis

Plant diseases have been associated with these Rickettsia-like organisms (RLOs):[16]

Infection occurs in nonhuman mammals; for example, species of Rickettsia have been found to afflict the South American guanaco, Lama guanacoe.[18]

Pathophysiology
Main article: Typhus

Rickettsial organisms are obligate intracellular parasites and invade vascular endothelial cells in target organs, damaging them and producing increased vascular permeability with consequent oedema, hypotension, and hypoalbuminaemia.[19]

Genomics

Certain segments of rickettsial genomes resemble those of mitochondria.[20] The deciphered genome of R. prowazekii is 1,111,523 bp long and contains 834 genes.[21] Unlike free-living bacteria, it contains no genes for anaerobic glycolysis or genes involved in the biosynthesis and regulation of amino acids and nucleosides. In this regard, it is similar to mitochondrial genomes; in both cases, nuclear (host) resources are used.

ATP production in Rickettsia is the same as that in mitochondria. In fact, of all the microbes known, the Rickettsia is probably the closest relative (in a phylogenetic sense) to the mitochondria. Unlike the latter, the genome of R. prowazekii, however, contains a complete set of genes encoding for the tricarboxylic acid cycle and the respiratory chain complex. Still, the genomes of the Rickettsia, as well as the mitochondria, are frequently said to be "small, highly derived products of several types of reductive evolution".

The recent discovery of another parallel between Rickettsia and viruses may become a basis for fighting HIV infection.[22] Human immune response to the scrub typhus pathogen, Orientia tsutsugamushi, appears to provide a beneficial effect against HIV infection progress, negatively influencing the virus replication process. A probable reason for this actively studied phenomenon is a certain degree of homology between the rickettsiae and the virus, namely, common epitope(s) due to common genome fragment(s) in both pathogens. Surprisingly, the other infection reported to be likely to provide the same effect (decrease in viral load) is the virus-caused illness dengue fever.

Comparative analysis of genomic sequences have also identified five conserved signature indels in important proteins, which are uniquely found in members of the genus Rickettsia. These indels consist of a four-amino-acid insertion in transcription repair coupling factor Mfd, a 10-amino-acid insertion in ribosomal protein L19, a one-amino-acid insertion in FtsZ, a one-amino-acid insertion in major sigma factor 70, and a one-amino-acid deletion in exonuclease VII. These indels are all characteristic of the genus and serve as molecular markers for Rickettsia.[23]

Bacterial small RNAs play critical roles in virulence and stress/adaptation responses. Although their specific functions have not been discovered in Rickettsia, few studies showed the expression of novel sRNA in human microvascular endothelial cells (HMEC) infected with Rickettsia.[24][25]

Naming

The genus Rickettsia is named after Howard Taylor Ricketts (1871–1910), who studied Rocky Mountain spotted fever in the Bitterroot Valley of Montana, and eventually died of typhus after studying that disease in Mexico City.

gollark: We should replace C(++) mostly with Rust or maybe Zig or high-level languages.
gollark: Consider a random CLI tool. That probably does *not* need access to C libraries specifically. Or a random desktop application.
gollark: That's mostly a bad reason because a lot of the time they *don't* really, or there are already libraries binding to C stuff.
gollark: Consider supreme overlord Rust. That has C bindings for loads. Consider Python and JS, less supreme and/or overlording. Those also have C bindings for many things.
gollark: Somewhat plausible, but you can bind to C from other languages fine.

References
  1. "Rickettsia" (HTML). NCBI taxonomy. Bethesda, MD: National Center for Biotechnology Information. Retrieved 8 January 2019.
  2. Skerman, VBD; McGowan, V; Sneath, PHA, eds. (1989). Approved Lists of Bacterial Names (amended ed.). Washington, DC: American Society for Microbiology.
  3. Truper H.G.; De' Clari L. (1997). "Taxonomic note: Necessary correction of specific epithets formed as substantives (nouns) 'in apposition'". Int J Syst Bacteriol. 47 (3): 908–909. doi:10.1099/00207713-47-3-908.
  4. Beati, L.; Meskini, M., et al. (1997), "Rickettsia aeschlimannii sp. nov., a new spotted fever group rickettsia associated with Hyalomma marginatum ticks", Int J Syst Bacteriol 47 (2): 548-55s4
  5. Kelly P.J.; Beati L.; et al. (1996). "Rickettsia africae sp. nov., the etiological agent of African tick bite fever". Int J Syst Bacteriol. 46 (2): 611–614. doi:10.1099/00207713-46-2-611.
  6. Fujita, H.; Fournier, P.-E., et al. (2006), "Rickettsia asiatica sp. nov., isolated in Japan", Int J Syst Evol Microbiol 56 (Pt 10): 2365–2368
  7. Billings A.N.; Teltow G.J.; et al. (1998). "Molecular characterization of a novel Rickettsia species from Ixodes scapularis in Texas" (PDF). Emerg Infect Dis. 4 (2): 305–309. doi:10.3201/eid0402.980221. PMC 2640119. PMID 9621204.
  8. La Scola, B.; Meconi, S., et al. (2002), "Emended description of Rickettsia felis (Bouyer et al. 2001), a temperature-dependent cultured bacterium", Int J Syst Evol Microbiol 52 (Pt 6): 2035–2041
  9. Walker DH (1996). Baron S; et al. (eds.). Rickettsiae. In: Barron's Medical Microbiology (4th ed.). Univ of Texas Medical Branch. ISBN 978-0-9631172-1-2. (via NCBI Bookshelf).
  10. Perlman, S.J.; Hunter, M.S.; Zchori-Fein, E. (2006). "The emerging diversity of 'Rickettsia'". Proceedings of the Royal Society B: Biological Sciences. 273 (1598): 2097–2106. doi:10.1098/rspb.2006.3541. PMC 1635513. PMID 16901827.
  11. Unsworth NB, Stenos J, Graves SR, et al. (April 2007). "Flinders Island spotted fever rickettsioses caused by "marmionii" strain of Rickettsia honei, Eastern Australia". Emerging Infectious Diseases. 13 (4): 566–73. doi:10.3201/eid1304.050087. PMC 2725950. PMID 17553271.
  12. Gillespie J.J.; Beeir M.S.; Rahman M.S.; Ammerman N.C.; Shallom J.M.; Purkayastha A.; Sobral B.S.; Azad A.F. (2007). "Plasmids and rickettsial evolution: insight from 'Rickettsia felis'". PLoS ONE. 2 (3): e266. Bibcode:2007PLoSO...2..266G. doi:10.1371/journal.pone.0000266. PMC 1800911. PMID 17342200. .
  13. "Rickettsia helvetica in Patient with Meningitis, Sweden, 2006" Emerging Infectious Diseases, Volume 16, Number 3 – March 2010
  14. Duh, D., V. Punda-Polic, T. Avsic-Zupanc, D. Bouyer, D.H. Walker, V.L. Popov, M. Jelovsek, M. Gracner, T. Trilar, N. Bradaric, T.J. Kurtti and J. Strus. (2010) Rickettsia hoogstraalii sp. nov., isolated from hard- and soft-bodied ticks. International Journal of Systematic and Evolutionary Microbiology, 60, 977–984; http://ijs.sgmjournals.org/cgi/content/abstract/60/4/977, accessed 16 July 2010.
  15. Ferla MP, Thrash JC, Giovannoni SJ, Patrick WM (2013). "New rRNA gene-based phylogenies of the Alphaproteobacteria provide perspective on major groups, mitochondrial ancestry and phylogenetic instability". PLOS One. 8 (12): e83383. doi:10.1371/journal.pone.0083383. PMC 3859672. PMID 24349502.
  16. Smith IM, Dunez J, Lelliot RA, Phillips DH, Archer SA (1988). European Handbook of Plant Diseases. Blackwell Scientific Publications. ISBN 978-0-632-01222-0.
  17. Davis, M. J. 1996
  18. C. Michael Hogan. 2008. Guanaco: Lama guanicoe, GlobalTwitcher.com, ed. N. Strömberg Archived 4 March 2011 at the Wayback Machine
  19. Rathore, Mobeen H (14 June 2016). "Rickettsial infection: Overview". Medscape. Retrieved 16 November 2017.
  20. Emelyanov VV (2003). "Mitochondrial connection to the origin of the eukaryotic cell". Eur J Biochem. 270 (8): 1599–618. doi:10.1046/j.1432-1033.2003.03499.x. PMID 12694174.
  21. Andersson SG, et al. (1998). "The genome sequence of Rickettsia prowazekii and the origin of mitochondria". Nature. 396 (6707): 133–40. Bibcode:1998Natur.396..133A. doi:10.1038/24094. PMID 9823893.
  22. Kannangara S, DeSimone JA, Pomerantz RJ (2005). "Attenuation of HIV-1 infection by other microbial agents". J Infect Dis. 192 (6): 1003–9. doi:10.1086/432767. PMID 16107952.
  23. Gupta, Radhey S. (January 2005). "Protein Signatures Distinctive of Alpha Proteobacteria and Its Subgroups and a Model for α –Proteobacterial Evolution". Critical Reviews in Microbiology. 31 (2): 101–135. doi:10.1080/10408410590922393. PMID 15986834.
  24. Schroeder, Casey L. C.; Narra, Hema P.; Rojas, Mark; Sahni, Abha; Patel, Jignesh; Khanipov, Kamil; Wood, Thomas G.; Fofanov, Yuriy; Sahni, Sanjeev K. (18 December 2015). "Bacterial small RNAs in the Genus Rickettsia". BMC Genomics. 16: 1075. doi:10.1186/s12864-015-2293-7. ISSN 1471-2164. PMC 4683814. PMID 26679185.
  25. Schroeder, Casey L. C.; Narra, Hema P.; Sahni, Abha; Rojas, Mark; Khanipov, Kamil; Patel, Jignesh; Shah, Riya; Fofanov, Yuriy; Sahni, Sanjeev K. (2016). "Identification and Characterization of Novel Small RNAs in Rickettsia prowazekii". Frontiers in Microbiology. 7: 859. doi:10.3389/fmicb.2016.00859. ISSN 1664-302X. PMC 4896933. PMID 27375581.
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