SecA

The SecA protein is a cell membrane associated subunit of the eubacterial Sec or Type II secretory pathway, a system which is responsible for the secretion of proteins through the cell membrane. Within this system SecA has the functional properties of an ATPase and is required to power the movement of the protein substrate across the translocon channel.

Eubacterial protein translocase subunit SecA
Identifiers
SymbolSecA
PfamPF07517

The translocase system encompasses an array of proteins which are functionally centred on the translocon channel which mediates the export of proteins across the bacterial cytoplasmic membrane and the insertion of membrane proteins into it. Regardless of the chosen targeting route, preprotein eventually reach the cytoplasmic membrane and make contact with the translocase. This translocase consists of the peripheral membrane ATPase SecA and the translocon membrane channel, which itself is composed of the proteins SecY, SecE, and SecG. Conformational changes within the SecA structure are the effect of its ATP-hydrolyzing behaviour and possibly lead to the stepwise export of the preprotein substrate through the SecYEG channel.[1]

Structure

SecA is a complex protein whose structure consists of six characterized domains that can explain SecA’s capabilities to bind substrates and to move them. The following five domains seem to be present in all SecA proteins that have been structurally analyzed so far.[2]

DEAD motor domain

This amino acid domain is subdivided into the two nucleotide binding folds 1 and 2 (NBF1 and NBF2) where ATP is bound and hydrolyzed. The chemical energy from the phosphodiester bonds results in a conformational change which is transferred to other domains (especially the HWD and the PPXD domains) which consequently mechanically move the preprotein across the membrane. However, these conformational changes are partly regulated by other protomer domains described below.

C-terminal linker domain

The capability to bind to the SecB chaperone during post-translational translocation, the ribosome (during both post-translational translocation and co-translational translocation [3]) and the phospholipid bilayer is important for SecA functioning and is achieved by the C-terminal linker domain.[4]

Helical wing domain (HWD)

Located at the C-terminal portion of the molecule, this domain is in contact with the HSD and PPXD domains. Likely it plays a role in transferring molecular conformational motion, which it receives from HSD and which originates from ATP hydrolysis in the DEAD motor domain, to the PPXD domain.

Peptide cross linking domain (PPXD)

Since SecA’s essential function is the transport of preprotein across the membrane the ability to actually bind preprotein must be given. The PPXD domain fulfils this function upon substrate binding.

Helical scaffold domain (HSD)

This domain lies in the center of the SecA protomer and contacts via α-helical interactions all other subdomains. In addition it contains the intramolecular regulator of ATP hydrolysis 1 (IRA1) subdomain which seems to prevent unwanted ATP hydrolysis when SecA is not bound to SecYEG. Together with IRA1, a conserved salt bridge called Gate 1 might function to prevent unnecessary conformational change. Gate 1 seems to functionally connect the nucleotide (ATP) binding site of the DEAD motor domain with the PPXD domain which results in regulation of ATP hydrolysis only upon preprotein binding. However, this coordinative behaviour has only been shown to occur when SecA is bound to SecYEG.[5]

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References
  1. du Plessis DJ, Nouwen N, Driessen AJ (March 2011). "The Sec translocase". Biochimica et Biophysica Acta (BBA) - Biomembranes. 1808 (3): 851–65. doi:10.1016/j.bbamem.2010.08.016. PMID 20801097.
  2. Kusters I, Driessen AJ (June 2011). "SecA, a remarkable nanomachine". Cellular and Molecular Life Sciences. 68 (12): 2053–66. doi:10.1007/s00018-011-0681-y. PMC 3101351. PMID 21479870.
  3. Wang, Shuai; Jomaa, Ahmad; Jaskolowski, Mateusz; Yang, Chien-I.; Ban, Nenad; Shan, Shu-ou (October 2019). "The molecular mechanism of cotranslational membrane protein recognition and targeting by SecA". Nature Structural & Molecular Biology. 26 (10): 919–929. doi:10.1038/s41594-019-0297-8. ISSN 1545-9985. PMC 6858539. PMID 31570874.
  4. Jamshad, Mohammed; Knowles, Timothy J; White, Scott A; Ward, Douglas G; Mohammed, Fiyaz; Rahman, Kazi Fahmida; Wynne, Max; Hughes, Gareth W; Kramer, Günter; Bukau, Bernd; Huber, Damon (2019-06-27). Hegde, Ramanujan S; Kuriyan, John (eds.). "The C-terminal tail of the bacterial translocation ATPase SecA modulates its activity". eLife. 8: e48385. doi:10.7554/eLife.48385. ISSN 2050-084X. PMC 6620043. PMID 31246174.
  5. Karamanou S, Gouridis G, Papanikou E, Sianidis G, Gelis I, Keramisanou D, Vrontou E, Kalodimos CG, Economou A (June 2007). "Preprotein-controlled catalysis in the helicase motor of SecA". The EMBO Journal. 26 (12): 2904–14. doi:10.1038/sj.emboj.7601721. PMC 1894763. PMID 17525736.
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