Partial charge

A partial charge is a non-integer charge value when measured in elementary charge units. Partial charge is more commonly called net atomic charge. It is represented by the Greek lowercase letter δ, namely δ− or δ+.

Partial charges are created due to the asymmetric distribution of electrons in chemical bonds. For example, in a polar covalent bond like HCl, the shared electron oscillates between the bonded atoms. The resulting partial charges are a property only of zones within the distribution, and not the assemblage as a whole. For example, chemists often choose to look at a small space surrounding the nucleus of an atom: When an electrically neutral atom bonds chemically to another neutral atom that is more electronegative, its electrons are partially drawn away. This leaves the region about that atom's nucleus with a partial positive charge, and it creates a partial negative charge on the atom to which it is bonded.

Polarity of chloromethane (left)
and of the related Grignard compound
with indication of the partial charge.

In such a situation, the distributed charges taken as a group always carries a whole number of elementary charge units. Yet one can point to zones within the assemblage where less than a full charge resides, such as the area around an atom's nucleus. This is possible in part because particles are not like mathematical points—which must be either inside a zone or outside it—but are smeared out by the uncertainty principle of quantum mechanics. Because of this smearing effect, if one defines a sufficiently small zone, a fundamental particle may be both partly inside and partly outside it.

Uses

Partial atomic charges are used in molecular mechanics force fields to compute the electrostatic interaction energy using Coulomb's law, even though this leads to substantial failures for anisotropic charge distributions.[1] Partial charges are also often used for a qualitative understanding of the structure and reactivity of molecules.

Determining partial atomic charges

Partial atomic charges can be used to quantify the degree of ionic versus covalent bonding of any compound across the periodic table. The necessity for such quantities arises, for example, in molecular simulations to compute bulk and surface properties in agreement with experiment. Evidence for chemically different compounds shows that available experimental data and chemical understanding lead to justified atomic charges.[2] Atomic charges for a given compound can be derived in multiple ways, such as:

  1. extracted from electron densities measured using high resolution x-ray, gamma ray, or electron beam diffraction experiments
  2. measured dipole moments
  3. the Extended Born thermodynamic cycle, including an analysis of covalent and ionic bonding contributions
  4. spectroscopically measured properties, such as core-electron binding energy shifts
  5. the relationship of atomic charges to melting points, solubility, and cleavage energies for a set of similar compounds with similar degree of covalent bonding
  6. the relationship of atomic charges to chemical reactivity and reaction mechanisms for similar compounds reported in the literature.

The discussion of individual compounds in prior work has shown convergence in atomic charges, i.e., a high level of consistency between the assigned degree of polarity and the physical-chemical properties mentioned above. The resulting uncertainty in atomic charges is ±0.1e to ±0.2e for highly charged compounds, and often <0.1e for compounds with atomic charges below ±1.0e. Often, the application of one or two of the above concepts already leads to very good values, especially taking into account a growing library of experimental benchmark compounds and compounds with tested force fields.[3]

The published research literature on partial atomic charges varies in quality from extremely poor to extremely well-done. Although a large number of different methods for assigning partial atomic charges from quantum chemistry calculations have been proposed over many decades, the vast majority of proposed methods do not work well across a wide variety of material types.[4][5] Only as recently as 2016 was a method for theoretically computing partial atomic charges developed that performs consistently well across an extremely wide variety of material types.[4][5] All of the earlier methods had fundamental deficiencies that prevented them from assigning accurate partial atomic charges in many materials.[4][5] Mulliken and Löwdin partial charges are physically unreasonable, because they do not have a mathematical limit as the basis set is improved towards completeness.[6] Hirshfeld partial charges are usually too low in magnitude.[7] Some methods for assigning partial atomic charges do not converge to a unique solution.[4] In some materials, atoms in molecules analysis yields non-nuclear attractors describing electron density partitions that cannot be assigned to any atom in the material; in such cases, atoms in molecules analysis cannot assign partial atomic charges.[8]

According to Cramer (2002), partial charge methods can be divided into four classes:[9]

  • Class I charges are those that are not determined from quantum mechanics, but from some intuitive or arbitrary approach. These approaches can be based on experimental data such as dipoles and electronegativities.
  • Class II charges are derived from partitioning the molecular wave function using some arbitrary, orbital based scheme.
  • Class III charges are based on a partitioning of a physical observable derived from the wave function, such as electron density.
  • Class IV charges are derived from a semiempirical mapping of a precursor charge of type II or III to reproduce experimentally determined observables such as dipole moments.

The following is a detailed list of methods, partly based on Meister and Schwarz (1994).[10]

  • Population analysis of wavefunctions
  • Partitioning of electron density distributions
    • Bader charges (obtained from an atoms in molecules analysis)
    • Density fitted atomic charges
    • Hirshfeld charges[13]
    • Maslen's corrected Bader charges[14]
    • Politzer's charges
    • Voronoi Deformation Density charges
    • Density Derived Electrostatic and Chemical (DDEC) charges, which simultaneously reproduce the chemical states of atoms in a material and the electrostatic potential surrounding the material's electron density distribution[15][4]
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References
  • Frank Jensen. Introduction to Computational Chemistry (2nd ed.). Wiley. ISBN 978-0-470-01187-4.
  1. Kramer, Christian; Spinn, Alexander; Liedl, Klaus R. (2014). "Charge Anisotropy: Where Atomic Multipoles Matter Most". Journal of Chemical Theory and Computation. 10 (10): 4488–4496. doi:10.1021/ct5005565.
  2. H. Heinz; U. W. Suter (2004). "Atomic Charges for Classical Simulations of Polar Systems". J. Phys. Chem. B. 108: 18341–18352. doi:10.1021/jp048142t.
  3. H. Heinz; T. Z. Lin; R. K. Mishra; F. S. Emami (2013). "Thermodynamically Consistent Force Fields for the Assembly of Inorganic, Organic, and Biological Nanostructures: The INTERFACE Force Field". Langmuir. 29: 1754–1765. doi:10.1021/la3038846. PMID 23276161.
  4. T. A. Manz; N. Gabaldon-Limas (2016). "Introducing DDEC6 atomic population analysis: part 1. Charge partitioning theory and methodology" (PDF). RSC Adv. 6: 47771–47801. doi:10.1039/c6ra04656h.
  5. N. Gabaldon-Limas; T. A. Manz (2016). "Introducing DDEC6 atomic population analysis: part 2. Computed results for a wide range of periodic and nonperiodic materials". RSC Adv. 6: 45727–45747. doi:10.1039/c6ra05507a.
  6. A. E. Reed; R. B. Weinstock; F. Weinhold (1985). "Natural population analysis". J. Chem. Phys. 83: 735–746. Bibcode:1985JChPh..83..735R. doi:10.1063/1.449486.
  7. E. R. Davidson; S. Chakravorty (1992). "A test of the Hirshfeld definition of atomic charges and moments". Theor. Chim. Acta. 83: 319–330. doi:10.1007/BF01113058.
  8. C. Gatti; P. Fantucci; G. Pacchioni (1987). "Charge density topological study of bonding in lithium clusters". Theor. Chim. Acta. 72: 433–458. doi:10.1007/BF01192234.
  9. C. J. Cramer (2002). Essentials of Computational Chemistry: Theories and Methods. Wiley. pp. 278–289.
  10. J. Meister; W. H. E. Schwarz (1994). "Principal Components of Ionicity". J. Phys. Chem. 98: 8245–8252. doi:10.1021/j100084a048.
  11. "Q-Chem 4.3 User's Manual : Wavefunction Analysis". Retrieved 2017-07-23.
  12. A. V. Marenich; S. V. Jerome; C. J. Cramer; D. G. Truhlar (2012). "Charge Model 5: An Extension of Hirshfeld Population Analysis for the Accurate Description of Molecular Interactions in Gaseous and Condensed Phases". J. Chem. Theory Comput. 8: 527–541. doi:10.1021/ct200866d.
  13. F. L. Hirshfeld (1977). "Bonded-atom fragments for describing molecular charge densities". Theor. Chim. Acta. 44: 129–138. doi:10.1007/BF00549096.
  14. E. N. Maslen; M. A. Spackman (1985). "Atomic charges and electron density partitioning". Aust. J. Phys. 38: 273–287. Bibcode:1985AuJPh..38..273M. doi:10.1071/PH850273.
  15. T. A. Manz; D. S. Sholl (2012). "Improved Atoms-in-Molecule Charge Partitioning Functional for Simultaneously Reproducing the Electrostatic Potential and Chemical States in Periodic and Nonperiodic Materials". J. Chem. Theory Comput. 8 (8): 2844–2867. doi:10.1021/ct3002199.
  16. P. J. Stephens; K. J. Jalkanen; R. W. Kawiecki (1990). "Theory of vibrational rotational strengths: comparison of a priori theory and approximate models". J. Am. Chem. Soc. 112 (18): 6518–6529. doi:10.1021/ja00174a011.
  17. Ph. Ghosez; J.-P. Michenaud; X. Gonze (1998). "Dynamical atomic charges: The case of ABO3 compounds". Phys. Rev. B. 58 (10): 6224–6240. arXiv:cond-mat/9805013. Bibcode:1998PhRvB..58.6224G. doi:10.1103/PhysRevB.58.6224.
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