In Windows 2000 era, typically you would criss cross them:
DC/DNS Server A:
Primary DNS points to Server B
Secondary DNS points to Loopback
DC/DNS Server B:
Primary DNS points to Server A
Secondary DNS points to Loopback
That was how I last understood it to be at least, and I believe it was someone on here who even corrected me about it.
EDIT: It looks like that best practices link in the other question linked above indicates the above to be correct. I suggest you follow that. I have removed my other lines as I do not want to confuse anybody!
Your primary nameserver should be another server with low latency, preferably in the same site in AD Sites and Services. That way replication partners can be quickly discovered and if something is wrong with the DNS service starting you can still perform resolution. You can also specify tertiary servers, but the order past the primary is for the most part irrelevant.