I'm assuming you've got a large chunk of servers running in an offline environment for security reasons (these reasons becoming more and more common). Having encountered a very similar situation myself. The real answer to the question it dependendes what your architecture looks like.
All the usual players (Chef, Puppet, CF-Engine, Salt, Annsible) will all work in an offline environment however certain things that work normally won't and will get in your way (e.g. puppet auto downloading module requirements from the forge won't work). However depending on what versions of the software you are using there are workarounds. For Puppet (if your using v3) I would suggest using r10k to help mitigate the problem (I believe v4 has it included).
What @David has said for puppet is also very good advise. Now matter what you are using I would suggest the following that I've found will make your life so much easier:-
- Try to avoid hard codding data into configuration (i.e. if your using puppet use hiera).
- Do as much dev on a networked environment as you can (that way then you don't need to worry about dependency problems when your developing
- If you can use client-server mode for most systems do so, as the local running modes do create some additional complexity that's a pain if you can't avoid it.
- (Chef/Puppet) If you've got a local repository server see if you can get it set up to serve the cookbooks/modules in-place of an internet connection (like you would with Maven)
From the windows perspective (assuming your using a recent version) have a look at using Windows DSC + Powershell, as at least Chef and Puppet have cookbooks/modules that can interact with it to configure windows components (and anything else you can do with Powershell).
If it helps have a look at my answer for my own question here, as this was one of the "other" deciding factors.
In general you'll to evaluate each tool against your own needs, but most cases I've found that there does seem to be some community solutions for any of the problems that mitigate anything issues you might have.