Sandrine Dudoit

Sandrine Dudoit is a professor of statistics and public health at the University of California, Berkeley. Her research applies statistics to microarray and genetic data; she is known as one of the founders of the open-source Bioconductor project for the development of bioinformatics software.[2]

Sandrine Dudoit
Alma materCarleton University
Scientific career
InstitutionsStanford University
University of California, Berkeley
ThesisLinkage Analysis of Complex Human Traits Using Identity by Descent Data
Doctoral advisorTerry Speed[1]
InfluencedKatherine Pollard
Websitewww.stat.berkeley.edu/users/sandrine/

Education and career

Dudoit studied for the French baccalauréat in mathematics and physical sciences at the Lycée Molière in Paris. She moved to Canada for her undergraduate studies, completing a bachelor's degree in mathematics in 1992 at Carleton University.[3]

As a beginning graduate student in the department of statistics at the University of California, Berkeley, Dudoit was the recipient of the Gertrude Cox Scholarship of the American Statistical Association's Committee on Women in Statistics.[4] She earned her doctorate at Berkeley in 1999. Her dissertation, Linkage Analysis of Complex Human Traits Using Identity by Descent Data, was supervised by Terry Speed.[1]

Career and research

After postdoctoral research with Patrick O. Brown at Stanford University, she joined the division of biostatistics in the UC Berkeley School of Public Health as an assistant professor in 2001. She added a joint appointment in the department of statistics in 2006.[3]

Awards and honors

Dudoit was elected as a Fellow of the American Statistical Association in 2010.[5][6] She became an Elected Member of the International Statistical Institute in 2014.[3][7]

Publications

Dudoit and Mark van der Laan are the authors of the book Multiple Testing Procedures with Applications to Genomics (Springer, 2008).[8] Dudoit is the editor of the book Selected Works of Terry Speed (Springer, 2012)[9] and co-editor of Bioinformatics and Computational Biology Solutions Using R and Bioconductor (Springer, 2005).[10]

Her research publications include:

  • Dudoit, Sandrine; Yang, Yee Hwa; Callow, Matthew J.; Speed, Terence P. (2002), "Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments", Statistica Sinica, 12 (1): 111–139, JSTOR 24307038, MR 1894191
  • Dudoit, Sandrine; Fridlyand, Jane; Speed, Terence P. (2002), "Comparison of discrimination methods for the classification of tumors using gene expression data", Journal of the American Statistical Association, 97 (457): 77–87, doi:10.1198/016214502753479248, MR 1963389
  • Yang, Yee Hwa; Dudoit, Sandrine; Luu, Percy; Lin, David M.; Peng, Vivian; Ngai, John; Speed, Terence P. (2002), "Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation", Nucleic Acids Research, 30 (4): e15, doi:10.1093/nar/30.4.e15, PMC 100354, PMID 11842121
  • Dudoit, Sandrine; Shaffer, Juliet Popper; Boldrick, Jennifer C. (2003), "Multiple hypothesis testing in microarray experiments", Statistical Science, 18 (1): 71–103, doi:10.1214/ss/1056397487, MR 1997066
  • Gentleman, Robert C.; Carey, Vincent J.; Bates, Douglas M.; Bolstad, Ben; Dettling, Marcel; Dudoit, Sandrine; Ellis, Byron; Gautier, Laurent; Ge, Yongchao; Gentry, Jeff; Hornik, Kurt; Hothorn, Torsten; Huber, Wolfgang; Iacus, Stefano; Irizarry, Rafael; Leisch, Friedrich; Li, Cheng; Maechler, Martin; Rossini, Anthony J.; Sawitzki, Gunther; Smith, Colin; Smyth, Gordon; Tierney, Luke; Yang, Jean Y. H.; Zhang, Jianhua (2004), "Bioconductor: open software development for computational biology and bioinformatics", Genome Biology, 5 (10): R80, doi:10.1186/gb-2004-5-10-r80, PMC 545600, PMID 15461798
  • Bullard, James H.; Purdom, Elizabeth; Hansen, Kasper D.; Dudoit, Sandrine (2010), "Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments", BMC Bioinformatics, 11 (1): 94, doi:10.1186/1471-2105-11-94, PMC 2838869, PMID 20167110
gollark: Linux *is* better a decent amount of the time, at least.
gollark: We could have a bot do it.
gollark: That can be arranged.
gollark: If being normal means using worse software/hardware/basically everything, I am okay with not being "normal".
gollark: > implying normal things are necessarily good

References
  1. Sandrine Dudoit at the Mathematics Genealogy Project
  2. Sandrine Dudoit publications indexed by Google Scholar
  3. Curriculum vitae (PDF), retrieved May 26, 2019
  4. Cox Scholarship Recipients, American Statistical Association Committee on Women in Statistics, retrieved May 27, 2019
  5. ASA Fellows, Caucus for Women in Statistics, 2016-03-29, retrieved May 27, 2019
  6. "Many Honored at Presidential Address, Awards Ceremony", JSM Highlights, AMSTAT News, October 1, 2010
  7. Individual members, International Statistical Institute, retrieved May 27, 2019
  8. Reviews of Multiple Testing Procedures with Applications to Genomics:
    • Schwender, Holger (June 2008), Statistical Papers, 50 (3): 681–682, doi:10.1007/s00362-008-0144-1CS1 maint: untitled periodical (link)
    • Crowder, Martin (August 2008), International Statistical Review / Revue Internationale de Statistique, 76 (2): 309–310, doi:10.1111/j.1751-5823.2008.00054_11.x, JSTOR 27919629CS1 maint: untitled periodical (link)
    • Bar-Hen, Avner (2009), Mathematical Reviews, Springer Series in Statistics, doi:10.1007/978-0-387-49317-6, ISBN 978-0-387-49316-9, MR 2373771CS1 maint: untitled periodical (link)
    • Heller, Ruth (March 2009), Biometrics, Wiley, 65 (1): 333–334, doi:10.1111/j.1541-0420.2009.01208_8.xCS1 maint: untitled periodical (link)
    • Sperrin, Matthew (April 2010), Journal of the Royal Statistical Society: Series A (Statistics in Society), 173 (2): 465, doi:10.1111/j.1467-985x.2009.00634_7.xCS1 maint: untitled periodical (link)
    • Läuter, Jürgen (September 2010), Biometrical Journal, 52 (5): 699, doi:10.1002/bimj.201000174CS1 maint: untitled periodical (link)
  9. Reviews of Selected Works of Terry Speed:
    • Technometrics, 54 (4): 446, November 2012, doi:10.1080/00401706.2012.726001, JSTOR 41714940CS1 maint: untitled periodical (link)
    • Draper, Norman R. (April 2013), International Statistical Review / Revue Internationale de Statistique, 81 (1): 170, doi:10.1111/insr.12011_22, JSTOR 43298831CS1 maint: untitled periodical (link)
  10. Reviews of Bioinformatics and Computational Biology Solutions Using R and Bioconductor:
    • Doerge, R. W. (December 2006), Biometrics, 62 (4): 1270–1271, doi:10.1111/j.1541-0420.2006.00596_2.xCS1 maint: untitled periodical (link)
    • Schadow, Gunther (December 2006), Briefings in Bioinformatics, 8 (2): 136–137, doi:10.1093/bib/bbl020CS1 maint: untitled periodical (link)
    • Davis, J. Wade (March 2007), Journal of the American Statistical Association, 102 (477): 388–389, doi:10.1198/jasa.2007.s179, JSTOR 27639862CS1 maint: untitled periodical (link)
    • Hewson, Paul (June 2007), Statistical Methods in Medical Research, 16 (3): 299–300, doi:10.1177/0962280207079524CS1 maint: untitled periodical (link)
    • Rahnenführer, Jörg (March 2008), Statistical Papers, 50 (2): 453–454, doi:10.1007/s00362-008-0124-5CS1 maint: untitled periodical (link)
    • Freiberger, Walter (June 2008), Quarterly of Applied Mathematics, 66 (2): 397, doi:10.1090/s0033-569x-08-01097-4, JSTOR 43638832CS1 maint: untitled periodical (link)



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