Pseudomonas citronellolis

Pseudomonas citronellolis is a Gram-negative, bacillus bacterium that is used to study the mechanisms of pyruvate carboxylase.[1] It was first isolated from forest soil, under pine trees, in northern Virginia, United States.[2]

Pseudomonas citronellolis
Scientific classification
Domain: Bacteria
Phylum: Proteobacteria
Class: Gammaproteobacteria
Order: Pseudomonadales
Family: Pseudomonadaceae
Genus: Pseudomonas
Species group: Pseudomonas aeruginosa group
Species:
P. citronellolis
Binomial name
Pseudomonas citronellolis
Seubert 1960
Type strain
ATCC 13674

CCUG 17933
CFBP 5585
CIP 104381
DSM 50332
IAM 15129
LMG 18378
NRRL B-2504

Characteristics

Pseudomonas citronellolis a Gram-negative, bacillus bacterium. It was first isolated from forest soil, under pine trees, in northern Virginia, United States.[2] It has one polar flagellum allowing it to be motile.

Relationship with plants

On agar, P. citronellolis forms round white colonies that produce fluorescent green pigments. It also produces a biofilm and is resistant to most antibiotics. The bacteria has a biotic relationship with its plant host (either with pine trees or basil). It produces a type of hormone that induces plant cell elongation and division, leading to an increase of local available nutrients.[3]

Metabolic potential

The study of P. citronellolis is important because it could be used as a model to research metabolism and enzyme activity concerning glucose. It also has the potential for use in biodegradation of polyethylene.[4]

Genome

The size of the genome is 6,951,444 bp with the size of DNA coding 6,028,113 bp. The average GC content is 67.11% and 4,665,300 bp . Of the 6169 predicted genes, 6071 (98.41%) were protein CDS of which 4762 genes had a function prediction. A total of 96 RNA genes were predicted including 15 rRNA.[3]

The Pseudomonas citronellolis's DNA isolation for a template's 16sR sequencing revealed 25 μl of diluted genomic DNA. BOXAIR, repetitive extragenic palindromic sequence-based PCR analysis (REP-PCR), and enterobacterial repetitive intergenic consensus (ERIC) were used as primers to amplify the DNA. PCR for the 29 strains of P. citronellolis yielded 8 to 12 amplified bands. These were very distinguishable with sizes ranging from 9,000 bp to 100 bp. REP-PCR produces the most complex amplified banding patterns, which reflected diversity among the P citronellolis strains isolated from different oily sludge-contaminated soil samples. The ribotype patterns of the P. citronellolis strains showed multiple amplicons that strongly indicated polymorphism of the rRNA spacer region. This experiment on the genome did not contain any plasmids and provided no evidence for its existence.[5]

Based on 16S rRNA analysis, P. citronellolis has been placed in the P. aeruginosa group.[6] P. citronellolis has also been found capable of the biosynthesis of polyhydroxyal-kanoates from "linear mono- and dicarboxylic acids", a type of bacterial-synthesized polyester.[7]

The P. citronellolis P3B5 genome contains genes that encode for six predicted lactamases that resist against lactam antibiotics. Furthermore, the genome contains genes encoding for efflux pumps that provide resistances to other antibiotics, such as trimethoprim. The P3B5 genome encodes genes that should enable it to degrade alkanes. In combination with its stress-resilience and plant reliance lifestyle, makes this organism an intriguing candidate for plant remediation approaches. Resistance to several ABs was observed and several ABR genes were detected, but no evidence for the potential of ABR gene mobilization could be found.[4]

gollark: I don't get it, this should basically perform *fine*.
gollark: It was +> on the old ubiqutious instance.
gollark: ```javascript let c=undefined; let okeys=Object.keys(nt) while (total>0){ let apiokey=okeys[Math.floor(Math.random()*okeys.length)]; total-=nt[apiokey]; c=apiokey } return c;```What *is* this?
gollark: Hmm, there are 1962 starters, this *cannot* be that slow.
gollark: Although it probably shouldn't run in quadratic time, at least.

References
  1. Seubert W, Remberger U (1961). "Purification and mechanism of action of pyruvate carboxylase from Pseudomonas citronellolis". Biochem Z. 334: 401–14. PMID 13750403.
  2. Seubert W (March 1960). "Degradation of isoprenoid compounds by micro-organisms. I. Isolation and characterization of an isoprenoid-degrading bacterium, Pseudomonas citronellolis n. sp". Journal of Bacteriology. 79: 426–34. doi:10.1128/jb.79.3.426-434.1960. PMC 278703. PMID 14445211.
  3. Remus-Emsermann MN, Schmid M, Gekenidis MT, Pelludat C, Frey JE, Ahrens CH, Drissner D (2016). "Pseudomonas citronellolis P3B5, a candidate for microbial phyllo-remediation of hydrocarbon-contaminated sites". Standards in Genomic Sciences. 11: 75. doi:10.1186/s40793-016-0190-6. PMC 5037603. PMID 28300228.
  4. Bhatia M, Girdhar A, Tiwari A, Nayarisseri A (2014). "Implications of a novel Pseudomonas species on low density polyethylene biodegradation: an in vitro to in silico approach". SpringerPlus. 3: 497. doi:10.1186/2193-1801-3-497. PMC 4409612. PMID 25932357.
  5. Bhattacharya D, Sarma PM, Krishnan S, Mishra S, Lal B (March 2003). "Evaluation of genetic diversity among Pseudomonas citronellolis strains isolated from oily sludge-contaminated sites". Applied and Environmental Microbiology. 69 (3): 1435–41. doi:10.1128/AEM.69.3.1435-1441.2003. PMC 150093. PMID 12620826.
  6. Anzai Y, Kim H, Park JY, Wakabayashi H, Oyaizu H (July 2000). "Phylogenetic affiliation of the pseudomonads based on 16S rRNA sequence". International Journal of Systematic and Evolutionary Microbiology. 50 (4): 1563–89. doi:10.1099/00207713-50-4-1563. PMID 10939664.
  7. Choi MH, Yoon SC (September 1994). "Polyester Biosynthesis Characteristics of Pseudomonas citronellolis Grown on Various Carbon Sources, Including 3-Methyl-Branched Substrates". Applied and Environmental Microbiology. 60 (9): 3245–54. doi:10.1128/aem.60.9.3245-3254.1994. PMC 201795. PMID 16349378.
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