Allen Institute

The Allen Institute is a non-profit, bioscience research institute located in Seattle. It was founded by billionaire philanthropist Paul G. Allen in 2003. The Allen Institute conducts large-scale basic science research studying the brain, cells and immune system in effort to accelerate science and disease research. The organization practices open science, in that they make all their data and resources publicly available for researchers to access.[1][2]

Allen Institute
Formation2003 (2003)
FoundersPaul Allen, Jody Allen
TypeIndependent, nonprofit medical research organization
(IRS exemption status): 501(c)(3)
PurposeDedicated to understanding the complexities of bioscience
HeadquartersSeattle, Washington, United States
Area served
Worldwide
Key people
Paul Allen, founder
Jody Allen, founder,
Allan Jones, Ph.D., CEO
Employees
~500
WebsiteAllen Institute
Entryway to the Allen Institute building in Seattle, Washington.

Scientific Focus

The Allen Institute's research is focused on neuroscience, through the Allen Institute for Brain Science, founded in 2003; cell biology, through the Allen Institute for Cell Science, founded in 2014;[3] broad areas of bioscience and medical research, through The Paul G. Allen Frontiers Group, founded in 2016;[4] and human immunology, through the Allen Institute for Immunology, founded in 2018.[5] The Paul G. Allen Frontiers Group recommends research funding to scientific investigators outside the Allen Institute, while the other three divisions conduct research in-house.

Allen Institute for Brain Science

The Allen Institute for Brain Science launched with an initial single scientific project, the Allen Mouse Brain Atlas,[6] which aimed to map gene expression across the entire mouse brain. The publication describing that project, published in 2007, has been cited more than 1,800 times.[7] The Allen Institute for Brain Science has since generated several other large-scale neuroscience projects, focusing on both the mouse and human brains in health and disease. Its most recent open-source projects focus on defining brain cell types in the healthy mouse[8] and human[9] brains through multimodal characterization of neurons and other brain cells, including their connectivity, electrophysiology, morphology and transcriptomic profiles; and on the cellular level of activity in the mouse visual cortex[10] through the Allen Brain Observatory. In 2020, the National Institutes of Health awarded $40.5 million to launch a new research center headquartered at the Allen Institute focused on brain cell types in Alzheimer's disease.[11]

Allen Institute for Cell Science

The Allen Institute for Cell Science was modeled on the Allen Institute for Brain Science and was launched to capture a global view of human cells, developing gene-edited, fluorescently tagged human induced pluripotent stem cells[12] that form the backbone of an openly available library of digital microscopy images[13] and computational models[14] to predict cellular organization. The tagged cell lines are available for others in the scientific community to use,[15] and have been used in research on kidney disease[16] and cardiomyocyte function,[17] among others. Ongoing projects at the institute include studies of cardiomyocyte differentiation[18] and mitosis.[19] Cell biology resources from the institute have been used in high school and college biology education, including at Washington State University.[20]

The Paul G. Allen Frontiers Group

The Paul G. Allen Frontiers Group recommends research funding from the Paul G. Allen Family Foundation to support bioscience and biomedical research.[21] Projects supported by Frontiers Group awards include research on regeneration,[22] gene drives,[23] and human brain evolution,[24] among many others. The Frontiers Group directs research support through two primary award mechanisms: Allen Distinguished Investigator awards, which are typically 3-year, $1.5 million awards given to one or a small set of researchers, and Allen Discovery Center awards, which are larger grants given to launch new research centers.[25] To date, four Allen Discovery Centers have been launched.[26][21]

Allen Institute for Immunology

The newest division of the Allen Institute, the Allen Institute for Immunology, was launched with a $125 million donation from Paul G. Allen two months after Allen's death.[27] The Allen Institute for Immunology's initial research focus is on the healthy human immune system and on changes in the immune system in two cancers, multiple myeloma and melanoma, and in three autoimmune diseases, inflammatory bowel disease, Crohn's disease and ulcerative colitis.[28] The institute does not conduct clinical research, but rather partners with existing clinical research groups at other organizations who collaborate on research and provide patient samples; the institute's research partners are the Benaroya Research Institute at Virginia Mason, Fred Hutchinson Cancer Research Center, the University of California San Diego with the University of Colorado Anschutz Medical Campus, and the University of Pennsylvania.[21] The institute's executive director is Thomas Bumol, formerly an executive at Eli Lilly.[28]

Scientific Approach

The Allen Institute employs three core principles that distinguish it from traditional academic laboratory and industry organization settings. Their large-scale, data-rich “big science” projects aim to answer fundamental questions of biology. Cross-functional groups of employees with differing specialties work together in a collaborative “team science” environment. All data and resources generated within the Institute are made publicly available as part of their “open science” model. Notable public resources include the Allen Mouse Brain and Human Brain Atlases.[29][30]

Board of Directors

The Allen Institute Board of Directors is chaired by Jody Allen. Other current board members are Paul Alivisatos, Margaret Anderson, Nathaniel T. "Buster" Brown, Phyllis J. Campbell, Thomas Daniel, Steve Hall, Allen D. Israel, Gary Locke,[31] and Michael Stryker.

Scientific Accomplishments
  • Allen Institute for Brain Science researchers collaborated with a research team from the University of Szeged to identify and name a newly discovered type of human neuron, the rosehip neuron, which is not found in mice.[32] The function of the rosehip neuron is as yet unclear.
  • In 2020, Allen Institute for Brain Science researchers reported the first electrical recordings from human von Economo neurons.[33]

Collaborations

The Allen Institute for Brain Science is part of the MICrONS program, which is funded by IARPA. The research collaboration aims to map all the synapses in one cubic millimeter of the mouse brain,[34] the largest such connectomics project to date.[35]

The Allen Institute for Brain Science hosts the BRAIN Initiative Cell Census Network, or BICCN, web data portal. This collaborative effort, funded by the National Institutes of Health, aims to create comprehensive catalogs of brain cell types from mouse, human and monkeys.[36]  

Headquarters
Allen Institute Headquarters

The Allen Institute is located in the South Lake Union neighborhood of Seattle, Washington and houses the Allen Institute for Brain Science, the Allen Institute for Cell Science, the Allen Institute for Immunology, and the Paul G. Allen Frontiers Group. The architects of the building were Perkins + Will and construction was conducted by GLY. It is a LEED-Gold certified green building.[37][38] The building is located at 615 Westlake Ave N and was dedicated on December 4, 2015,[39] and was a runner up for building of the year by the Seattle Daily Journal of Commerce.[40]

To help facilitate their collaborative team science approach, the six-story building was designed around a central atrium, alternating laboratories with traditional and flexible meeting spaces throughout.[41] The building also includes an auditorium were multiple public events and symposia are held.

The location of the Allen Institute was home to the historic McKay Ford and Pacific auto dealer, built in the early 1920s.[42] During construction the 2,760 piece terra cotta façade was removed and reinstalled upon completion of the building.[43] It houses a craft beer hall with mini golf and other games.[44]

Mirall

Outside the building is Mirall, a sculpture by Jaume Plensa installed in October 2015.[45][46] The art work features two large figures, each about 12 feet tall (3.6 metres).

gollark: I do not see how taking away free speech stops those, or is a remotely appropriate reaction.
gollark: It's kind of incoherent to say "free speech is bad" and also "I should be allowed free speech" at the same time.
gollark: I mean, you are DEFINITELY more free to say things than in North Korea or China.
gollark: That doesn't mean it'll *always happen*.
gollark: It's not "don't align with your interests" as much as "egregiously oppress people".

See also

References
  1. "Allen Institute's leaders lay out vision for bringing more openness to Big Science". GeekWire. 2016-11-04. Retrieved 2020-06-29.
  2. Koch, Christof; Jones, Allan (2016-11-02). "Big Science, Team Science, and Open Science for Neuroscience". Neuron. 92 (3): 612–616. doi:10.1016/j.neuron.2016.10.019. ISSN 0896-6273.
  3. Flam, Faye. "Biologists Get $100 Million From Billionaire Paul Allen To Investigate Cells". Forbes. Retrieved 2020-06-29.
  4. "Paul Allen launches $100M Frontiers Group program for 'out-of-the-box' bioscience". GeekWire. 2016-03-23. Retrieved 2020-06-29.
  5. "Allen Institute announces $125 million gift to probe human immunology". STAT. 2018-12-12. Retrieved 2020-06-29.
  6. "A Digital 3-D Brain Map Breakthrough". NPR.org. Retrieved 2020-06-29.
  7. Lein, Ed S.; Hawrylycz, Michael J.; Ao, Nancy; Ayres, Mikael; Bensinger, Amy; Bernard, Amy; Boe, Andrew F.; Boguski, Mark S.; Brockway, Kevin S.; Byrnes, Emi J.; Chen, Lin (2007-01-11). "Genome-wide atlas of gene expression in the adult mouse brain". Nature. 445 (7124): 168–176. doi:10.1038/nature05453. ISSN 1476-4687. PMID 17151600.
  8. "Neuroscientists draw up a 'parts list' covering 133 different types of brain cells". GeekWire. 2018-11-01. Retrieved 2020-06-29.
  9. "Scientists And Surgeons Team Up To Create Virtual Human Brain Cells". NPR.org. Retrieved 2020-06-29.
  10. "When you show a mouse a movie: Allen Institute opens window into brain". The Seattle Times. 2016-07-13. Retrieved 2020-06-29.
  11. "Project Information - NIH RePORTER - NIH Research Portfolio Online Reporting Tools Expenditures and Results". projectreporter.nih.gov. Retrieved 2020-06-29.
  12. "CRISPR in color: Allen Institute edits genes to create color-coded stem cells". GeekWire. 2016-11-30. Retrieved 2020-06-29.
  13. "Paul Allen's latest science project: a psychedelic way to peer inside cells". The Seattle Times. 2017-04-05. Retrieved 2020-06-29.
  14. "Artificial Intelligence Takes Scientists Inside Living Human Cells". NPR.org. Retrieved 2020-06-29.
  15. "Glowing Human Cells May Shed Light On Sickness And Health". NPR.org. Retrieved 2020-06-29.
  16. "Allen Institute for Cell Science features Freedman Lab research - Illuminating the Kidney | Division of Nephrology | University of Washington". nephrology.uw.edu. Retrieved 2020-06-29.
  17. "Christopher Chen explains the importance of Allen Institute's cell lines in "Cell Shorts" video | Engineering Research Center in Cellular Metamaterials". www.bu.edu. Retrieved 2020-06-29.
  18. "Image of the Day: Beating Heart". The Scientist Magazine®. Retrieved 2020-06-29.
  19. "Allen Institute researchers show how cells divide in first-of-its-kind 3D model". GeekWire. 2019-05-22. Retrieved 2020-06-29.
  20. Wolcott, R. J. (2020-04-22). "WSU professors create virtual lab on cell development | WSU Insider | Washington State University". WSU Insider. Retrieved 2020-06-29.
  21. Cha, Ariana Eunjung. "Philanthropist Paul Allen announces $100 million gift to expand 'frontiers of bioscience'". Washington Post. Retrieved 2020-06-29.
  22. "Regeneration science takes a leap forward". Tufts Now. 2018-11-02. Retrieved 2020-06-29.
  23. Fikes, Bradley J. (2016-06-04). "UCSD gene drive technology offers life-transforming power". San Diego Union-Tribune. Retrieved 2020-06-29.
  24. "Biomedical labs at UW and in Boston win $10M grants from Allen Frontiers Group". GeekWire. 2017-07-05. Retrieved 2020-06-29.
  25. Cha, Ariana Eunjung. "Philanthropist Paul Allen announces $100 million gift to expand 'frontiers of bioscience'". Washington Post. Retrieved 2020-06-29.
  26. "Biomedical labs at UW and in Boston win $10M grants from Allen Frontiers Group". GeekWire. 2017-07-05. Retrieved 2020-06-29.
  27. "Allen Institute announces $125 million gift to probe human immunology". STAT. 2018-12-12. Retrieved 2020-06-29.
  28. "Allen Institute launches new immunology division with $125M from its late founder". GeekWire. 2018-12-12. Retrieved 2020-06-29.
  29. "Allen Institute's leaders lay out vision for bringing more openness to Big Science". GeekWire. 2016-11-04. Retrieved 2020-06-29.
  30. Koch, Christof; Jones, Allan (2016-11-02). "Big Science, Team Science, and Open Science for Neuroscience". Neuron. 92 (3): 612–616. doi:10.1016/j.neuron.2016.10.019. ISSN 0896-6273.
  31. "Tech Moves: Allen Institute adds former governor to board; Starbucks hires a CMO; and more". GeekWire. 2020-02-20. Retrieved 2020-06-29.
  32. Daley, Jason. "Meet the Rosehip Neuron: A Newly Discovered Cell in the Human Brain". Smithsonian Magazine. Retrieved 2020-06-29.
  33. Nield, David. "Scientists Just Took a Closer Look at an Incredibly Rare Human Brain Cell Type". ScienceAlert. Retrieved 2020-06-29.
  34. Cepelewicz, Jordana. "The U.S. Government Launches a $100-Million "Apollo Project of the Brain"". Scientific American. Retrieved 2020-06-29.
  35. "MICrONS". www.iarpa.gov. Retrieved 2020-06-29.
  36. "NIH BRAIN Initiative launches cell census". National Institutes of Health (NIH). 2017-10-23. Retrieved 2020-06-29.
  37. Keeley, Sean (2015-06-10). "New Allen Institute Building Unveils Historic Terra Cotta Facade". Curbed Seattle. Retrieved 2020-06-29.
  38. "Vulcan Block 43 | Allen Institute | Seattle". GLY Construction. Retrieved 2020-06-29.
  39. "Inside the Allen Institute's new headquarters". www.bizjournals.com. 1 December 2015. Retrieved 2020-06-29.
  40. http://www.djc.com/cust/BuildingoftheYear2015/
  41. "Allen Institute for Brain Science – Perkins and Will". perkinswill.com. Retrieved 2020-06-29.
  42. Pryne, Eric (2008-06-14). "Vulcan wants to relocate historic pieces of Lake Union dealerships". The Seattle Times. Retrieved 2020-06-29.
  43. www.bizjournals.com https://www.bizjournals.com/seattle/blog/health-care-inc/2015/06/allen-institute-hq-goes-retro-builds-seattle.html. Retrieved 2020-06-29. Missing or empty |title= (help)
  44. www.bizjournals.com https://www.bizjournals.com/seattle/news/2018/07/27/flatstick-pub-south-lake-union-opens-photos.html. Retrieved 2020-06-29. Missing or empty |title= (help)
  45. "Creative Connections - Discover South Lake Union". Discover South Lake Union. Retrieved 2018-04-09.
  46. "Allen Institute adds artist-in-residence to interact with scientists and provoke mutual inspiration". GeekWire. 2018-03-21. Retrieved 2018-04-09.
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