AMAP
AMAP is a multiple sequence alignment program based on sequence annealing.[1] This approach consists of building up the multiple alignment one match at a time, thereby circumventing many of the problems of progressive alignment. The AMAP parameters can be used to tune the sensivitiy-specificity tradeoff.
Developer(s) | Ariel Schwartz (UC Berkeley), Lior Pachter (UC Berkeley) |
---|---|
Stable release | 2.0
|
Operating system | UNIX, Linux, Mac |
Type | Bioinformatics tool |
Licence | Open source |
Website | AMAP download |
The program can be used through the AMAP web server or as a standalone program which can be installed with the source code.
Input/Output
This program accepts sequences in FASTA format.
The output format includes: FASTA format, Clustal.
gollark: <@805534998660775986> leaderboard
gollark: <@805534998660775986> listing of some sort
gollark: <@805534998660775986> rankify
gollark: <@805534998660775986>
gollark: <@805534998660775986> <@!509849474647064576>
References
- S. Schwartz, A.; Pachter, L. (19 January 2007). "Multiple alignment by sequence annealing". Bioinformatics. 23 (2): e24–e29. doi:10.1093/bioinformatics/btl311.
External links
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