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In the awk
below I am trying to cp
and paste
each matching line in f2
to $3
in f1
if $2
of f1
is in the line in f2
somewhere. There will always be a match (usually more then 1) and my actual data is much larger (several hundreds of lines) in both f1
and f2
. When the line in f2
is pasted to $3
in f1
, the value in $1
is appended to it at the end of the line with a /test/id/$1_raw.file_fixed.txt
. The $1
value is from f1
as well. Most of this is static text, except the value from $1
is after the third /
. The lines that begin with R_2019
are just printed as is. The awk
does execute but the output is unchanged. Thank you :).
I also tried another awk
with no luck.
f1
xyxy_0268 0000-yyyy
xyxy_0270 1111-xxxx
R_0000_00_02_00_45_32_xxxx_x0-0000-100-x0.0_xxxx_xxxx_xxxx_xxxx_xxxx_xxxx
f2
/path/to/the/xxx/data/0000-yyyy_v1_0000-yyyy_RNA_v1/190326-Control_v1_20190328071906449
/path/to/the/xxx/data/00-0000_xxxx-03_v1/00-0000_xxxx-03_v1_20190322115521953
/path/to/the/xxx/data/1111-xxxx-03_v1/1111-xxxx-03_v1_20190322115521953
desired
xyxy_0268 0000-yyyy /path/to/the/xxx/data/0000-yyyy_v1_0000-yyyy_RNA_v1/190326-Control_v1_20190328071906449/test/id/xyxy_0268_raw.file_fixed.txt
xyxy_0270 1111-xxxx /path/to/the/xxx/data/1111-xxxx-03_v1/1111-xxxx-03_v1_20190322115521953/test/id/xyxy_0270_raw.file_fixed.txt
R_0000_00_02_00_45_32_xxxx_x0-0000-100-x0.0_xxxx_xxxx_xxxx_xxxx_xxxx_xxxx
awk
awk 'NR==FNR {for(i=1; i<=NF; i++) id[$i]=$1; next} $2 in id{$3=id[$i] "/test/id/" $1 "_raw.file_fixed.txt"}1' f2 f1
awk 'NR==FNR {for(i=1; i<=NF; i++) id[$i]=$1; next} $2 in id{$3=id/$2/ "/test/id/" $1 "_raw.file_fixed.txt"}1' f2 f1