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Currently I am dual EFI booting Windows 10 and OS X El Capitan on 2 separate SSD's.
I also have 2 separate HDD's. One is formatted NTFS, and one is formatted NTFS, and HFS in 2 separate partitions.
Using Windows 10 in Parallels works perfect after installing Parallels Tools. It works just as if I had an iMac with Windows 10 installed under BootCamp. No problems what so ever starting the virtual machine, and performance is great.
The problem is, once I decide to boot back into Windows 10 the 2 separate HDD's are not properly initialized in Windows 10 until I uninstall Parallels Tools. Device manager properly recognizes them but throws an error and says they can not be properly initialized.
I pinned the problem down to Parallels Tools because once I uninstall it, and restart Windows 10, everything works as normal. This is still usable, as I can just install Parallels Tools every time I boot my Windows 10 install as a virtual machine in Parallels, and then if I want to boot directly into Windows 10 I can uninstall Parallels Tools, and reboot again and I'm back to normal, but I would like to know if anyone has any suggestions or experience with this and if there is a fix.
It would be nice if I didn't have to install and uninstall Parallels Tools everytime.
Are you shutting down the VM before rebooting into it as Boot Camp? Also, are you using Parallels 11? Earlier versions have issues on El Cap. – Tetsujin – 2016-08-09T08:23:34.547
@Tetsujin Yes, properly shutting down the machine each time, and I am using Parallels 11. – mcbeav – 2016-08-11T13:42:18.677