I have successfully installed Torque PBS on my ubuntu server. Job submission is fine. However there is an annoying thing. I found bash environment is not right inside PBS
for example
echo 'echo $PATH > ~/res.txt' | qsub
and the content of res.txt is
/home/admin-pc/bin:/home/admin-pc/.local/bin:/bin:/usr/bin:/snap/bin
This is definitely not what my PATH is.
So I tried
echo 'source ~/.bashrc;echo $PATH > ~/res.txt' | qsub
This doesn't work. It just output the same PATH
So I was wondering, maybe ~/.bashrc is not the same inside PBS. So I tried
echo 'cat ~/.bashrc > ~/res.txt' | qsub
But the content of res.txt is exactly what my ~/.bashrc is.
This is really odd to me.
The only workaround I found is to use bash -ic
echo "bash -ic 'echo \$PATH > ~/res.txt'"|qsub
But this is so awkward. Is there any better way to make PBS automatic inherit bash environment?
