Use a working DNS forwarder in your DNS server. (like 8.8.8.8 or your ISP DNS), and be sure your pc all use only your internal DNS server.
Flush the cache on your server and computer after
Edited:
After testing with a domain in error from my side it still resolve to 127.0.0.1. So now I think someone tried to protect itself from a DoS, and configured the local loopback in the DNS's entry as a attempt to un-route unwanted traffic. Nothing we can change for those DNS entry. So yes, I would ignore those warning if the machine that do the lookup are virus clean, as I would ask myself why the computer try to go there.