I have a MOSS 2007 standard farm comprised of a WFE, an indexing server, and a SQL 2005 database server. The web app is being served on port 80 (http) to an ISA server where it is SSL'd. I have AAMs to change the URLs from http to https.
My problem is with the emails that are generated by lists within the MOSS farm. The urls inside the emails are random between http:// and https://. I can't find a pattern to figure out what the issue is. The same thing happens from different lists in different sites all over the farm. The majority of the emails sent out are incorrect.
Update: I figured out that the alerts are https://, which is correct, but the email notifications are wrong.
I may be using incorrect syntax, so what i mean by alerts is from a list when you click actions, alert me. And notifications are what gets sent when an item is assigned to you.