TRIM15

Tripartite motif-containing protein 15 is a protein that in humans is encoded by the TRIM15 gene.[5][6][7][8]

TRIM15
Identifiers
Aliases	TRIM15, RNF93, ZNF178, ZNFB7, tripartite motif containing 15
External IDs	MGI: 1916347 HomoloGene: 23819 GeneCards: TRIM15
Gene location (Human) Chr. Chromosome 6 (human)[1] Band 6p22.1 Start 30,163,206 bp[1] End 30,172,693 bp[1]
Gene location (Mouse) Chr. Chromosome 17 (mouse)[2] Band 17|17 B1 Start 36,860,691 bp[2] End 36,867,210 bp[2]
RNA expression pattern More reference expression data
Gene ontology Molecular function • zinc ion binding • GO:0001948 protein binding • metal ion binding Cellular component • intracellular Biological process • mesodermal cell fate determination • positive regulation of sequence-specific DNA binding transcription factor activity • innate immune system • positive regulation of RIG-I signaling pathway • positive regulation of NF-kappaB transcription factor activity • positive regulation of type I interferon production • negative regulation of intracellular transport of viral material • negative regulation of viral release from host cell Sources:Amigo / QuickGO
Orthologs
Species	Human	Mouse
Entrez	89870	69097
Ensembl	ENSG00000235960 ENSG00000227147 ENSG00000233599 ENSG00000204610 ENSG00000224145 ENSG00000235905 ENSG00000137384 ENSG00000235259	ENSMUSG00000050747
UniProt	Q9C019	n/a
RefSeq (mRNA)	NM_033229 NM_052812	NM_001024134 NM_001177872
RefSeq (protein)	NP_150232	n/a
Location (UCSC)	Chr 6: 30.16 – 30.17 Mb	Chr 17: 36.86 – 36.87 Mb
PubMed search	[3]	[4]
Wikidata
View/Edit Human View/Edit Mouse

The protein encoded by this gene is a member of the tripartite motif (TRIM) family. The TRIM motif includes three zinc-binding domains, a RING, a B-box type 1 and a B-box type 2, and a coiled-coil region. The protein localizes to the cytoplasm. Its function has not been identified. Alternate splicing of this gene results in two transcript variants encoding different isoforms.[8]

References

1. ENSG00000227147, ENSG00000233599, ENSG00000204610, ENSG00000224145, ENSG00000235905, ENSG00000137384, ENSG00000235259 GRCh38: Ensembl release 89: ENSG00000235960, ENSG00000227147, ENSG00000233599, ENSG00000204610, ENSG00000224145, ENSG00000235905, ENSG00000137384, ENSG00000235259 - Ensembl, May 2017
2. GRCm38: Ensembl release 89: ENSMUSG00000050747 - Ensembl, May 2017
3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. Reymond A, Meroni G, Fantozzi A, Merla G, Cairo S, Luzi L, Riganelli D, Zanaria E, Messali S, Cainarca S, Guffanti A, Minucci S, Pelicci PG, Ballabio A (May 2001). "The tripartite motif family identifies cell compartments". EMBO J. 20 (9): 2140–51. doi:10.1093/emboj/20.9.2140. PMC 125245. PMID 11331580.
6. Goei VL, Parimoo S, Capossela A, Chu TW, Gruen JR (Mar 1994). "Isolation of novel non-HLA gene fragments from the hemochromatosis region (6p21.3) by cDNA hybridization selection". Am J Hum Genet. 54 (2): 244–51. PMC 1918154. PMID 8304341.
7. Gruen JR, Nalabolu SR, Chu TW, Bowlus C, Fan WF, Goei VL, Wei H, Sivakamasundari R, Liu Y, Xu HX, Parimoo S, Nallur G, Ajioka R, Shukla H, Bray-Ward P, Pan J, Weissman SM (Feb 1997). "A transcription map of the major histocompatibility complex (MHC) class I region". Genomics. 36 (1): 70–85. doi:10.1006/geno.1996.0427. PMID 8812418.
8. "Entrez Gene: TRIM15 tripartite motif-containing 15".

Further reading

• Shiina T, Ota M, Shimizu S, et al. (2006). "Rapid Evolution of Major Histocompatibility Complex Class I Genes in Primates Generates New Disease Alleles in Humans via Hitchhiking Diversity". Genetics. 173 (3): 1555–70. doi:10.1534/genetics.106.057034. PMC 1526686. PMID 16702430.
• Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC 528928. PMID 15489334.
• Suzuki Y, Yamashita R, Shirota M, et al. (2004). "Sequence Comparison of Human and Mouse Genes Reveals a Homologous Block Structure in the Promoter Regions". Genome Res. 14 (9): 1711–8. doi:10.1101/gr.2435604. PMC 515316. PMID 15342556.
• Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.
• Harada H, Harada Y, O'Brien DP, et al. (1999). "HERF1, a Novel Hematopoiesis-Specific RING Finger Protein, Is Required for Terminal Differentiation of Erythroid Cells". Mol. Cell. Biol. 19 (5): 3808–15. PMC 84222. PMID 10207104.