Resazurin

Resazurin (7-Hydroxy-3H-phenoxazin-3-one 10-oxide) is a phenoxazine dye that is weakly fluorescent, nontoxic, cell-permeable, and redox‐sensitive.[3][4] Resazurin has a blue to purple color (at pH > 6.5) and is used in microbiological, cellular, and enzymatic assays because it can be irreversibly reduced to the pink-colored and highly fluorescent resorufin (7-Hydroxy-3H-phenoxazin-3-one). At circum-neutral pH, resorufin can be detected by visual observation of its pink color or by fluorimetry, with an excitation maximum at 530-570 nm and an emission maximum at 580-590 nm[5].

Resazurin
Names
IUPAC name
7-hydroxy-10-oxidophenoxazin-10-ium-3-one
Other names
Alamar Blue, Vybrant, UptiBlue, diazo-resorcinol, azoresorcin, resazoin, resazurine
Identifiers
3D model (JSmol)
ChEMBL
ChemSpider
ECHA InfoCard 100.008.171
UNII
Properties
C12H7NO4
Molar mass 229.191 g·mol−1
soluble
Hazards
GHS pictograms
GHS Signal word Warning
GHS hazard statements
 H315, H319, H335
P261, P305+351+338
NFPA 704 (fire diamond)
Flammability code 1: Must be pre-heated before ignition can occur. Flash point over 93 °C (200 °F). E.g. canola oilHealth code 2: Intense or continued but not chronic exposure could cause temporary incapacitation or possible residual injury. E.g. chloroformReactivity code 0: Normally stable, even under fire exposure conditions, and is not reactive with water. E.g. liquid nitrogenSpecial hazards (white): no code
1
2
0
Except where otherwise noted, data are given for materials in their standard state (at 25 °C [77 °F], 100 kPa).
N verify (what is YN ?)
Infobox references

When a solution containing resorufin is submitted to reducing conditions (Eh < -110 mV), almost all resorufin is reversibly reduced to the translucid non-fluorescent dihydroresorufin (sin. hydroresorufin) and the solution becomes translucid (the redox potential of the resorufin/dihydroresorufin pair is -51 mV vs. standard hydrogen electrode at pH 7.0). When the Eh of this same solution is increased, dihydroresorufin is oxidized back to resorufin, and this reversible reaction can be used to monitor if the redox potential of a culture medium remains at a sufficiently low level for anaerobic organisms.

Resazurin (pH indicator)
below pH 6.5 above pH 6.5
6.5 ⇌ 6.5

Resazurin solution has one of the highest values known of Kreft's dichromaticity index.[6] This means that it has a large change in perceived color hue when the thickness or concentration of observed sample increases or decreases.

Usually, resazurin is available commercially as the sodium salt.

Cell viability applications

Resazurin is reduced to resorufin by aerobic respiration of metabolically active cells, and it can be used as an indicator of cell viability. It was first used to quantify bacterial content in milk by Pesch and Simmert in 1929.[7] It can be used to detect the presence of viable cells in mammalian cell cultures.[8] It was introduced commercially initially under Alamar Blue trademark (Trek Diagnostic Systems, Inc), and now also available under other names such as AB assay, Vybrant (Molecular Probes) and UptiBlue (Interchim).

Resazurin based assays show excellent correlation to reference viability assays such as formazan-based assays (MTT/XTT) and tritiated thymidine based techniques.[9] The low toxicity makes it suitable for longer studies, and it has been applied for animal cells, bacteria, and fungi [9] for cell culture assays such as cell counting, cell survival, and cell proliferation.[10].

To take the place of a standard live/dead assay, resazurin also be multiplexed with chemiluminescent assays, such as cytokine assays, caspase assays to measure apoptosis, or reporter assays to measure a gene or a protein expression.[9]

The irreversible reaction of resazurin to resorufin is proportional to aerobic respiration.[11]

  • Resazurin as a colorimetric assay for cell viability
  • Resazurin used as a fluorescent assay for cell viability - Resazurin does not fluoresce when exposed to green light
  • Resazurin as a fluorescent assay for cell viability - Resorufin fluoresces when exposed to green light

Other applications
Reduction of resazurin to resorufin, and reversible reduction of resorufin to dihydroresorufin.

Resazurin is effectively reduced in mitochondria, making it useful also to assess mitochondrial metabolic activity.

Usually, in the presence of NADPH dehydrogenase or NADH dehydrogenase as the enzyme, NADPH or NADH is the reductant that converts resazurin to resorufin. Hence the resazurin/diaphorase/NADPH system can be used to detect NADH, NADPH, or diaphorase level, and any biochemical or enzyme activity that is involved in a biochemical reaction generating NADH or NADPH.[12][13][14][15][16]

Resazurin can be used to assay L-Glutamate, achieving a sensitivity of 2.0 pmol per well in a 96 well plate.[17]

Resazurin can also be used to measure the aerobic biodegradation of organic matter found in effluents.[18]

Resazurin is used to measure the amount of aerobic respiration in streams[19] Since most aerobic respiration occurs in the stream bed, the conversion of resazurin to resorufin is also a measure of the amount of exchange between the water column and the stream bed.

Synthesis

Resazurin is prepared by acid-catalyzed condensation between resorcinol and 4-nitrosoresorcinol followed by oxidation of the intermediate with manganese(IV) oxide:

Resazurin synthesis

Treatment of the crude reaction product with excess sodium carbonate yields the sodium salt of resazurin, which is typically the commercial form of the dye. Running the condensation step in alcohols is possible but results in lower yields of the product; in pure water or acetic acid, the reaction does not proceed satisfactorily.[20]

10-acetyl-3,7-dihydroxyphenoxazine (also known as Amplex Red), structurally related to resazurin, reacts with H2O2 in a 1:1 stoichiometry to produce the same by-product resorufin (used in many assays combining for example horseradish peroxidase (HRP), or NADH, NADPH using enzymes).[21][22]

7-ethoxyresorufin, is a compound used as the substrate in the measurement of cytochrome P450 (CYP1A1) induction using the ethoxyresorufin-O-deethylase (EROD) assay system in cell culture and environmental samples, produced in response to exposure to aryl hydrocarbons. The compound is catalysed by the enzyme to produce the same fluorescent product, resorufin.

1,3-dichloro-7-hydroxy-9,9-dimethylacridin-2(9H)-one (DDAO dye), fluorescent dye used for oligonucleotide labeling.

gollark: You can probably still see in the channel until you select another one.
gollark: Not necessarily.
gollark: Or maybe >50% is bots!
gollark: Maybe they unreacted after being verified
gollark: Not *much* politics.

References
  1. "Resazurin | C12H7NO4 | ChemSpider".
  2. "Resazurin | C12H7NO4 | ChemSpider".
  3. Bueno, C.; Villegas, M. L.; Bertolotti, S. G.; Previtali, C. M.; Neumann, M. G.; Encinas, M. V. (2002). "The Excited-State Interaction of Resazurin and Resorufin with Aminesin Aqueous Solutions. Photophysics and Photochemical Reaction". Photochemistry and Photobiology. 76 (4): 385–90. doi:10.1562/0031-8655(2002)0760385TESIOR2.0.CO2. PMID 12405144.
  4. Haggerty, Roy; Martí, Eugènia; Argerich, Alba; Schiller, Daniel von; Grimm, Nancy B. (2009). "Resazurin as a "smart" tracer for quantifying metabolically active transient storage in stream ecosystems". Journal of Geophysical Research: Biogeosciences. 114 (G3). doi:10.1029/2008JG000942. hdl:10261/38263. ISSN 2156-2202.
  5. Chen, J. L., Steele, T. W., & Stuckey, D. C. (2015). Modeling and application of a rapid fluorescence-based assay for biotoxicity in anaerobic digestion. Environmental science & technology, 49(22), 13463-13471.http://pubs.acs.org/doi/10.1021/acs.est.5b03050
  6. Kreft, Samo; Kreft, Marko (2009). "Quantification of dichromatism: A characteristic of color in transparent materials". Journal of the Optical Society of America A. 26 (7): 1576–81. Bibcode:2009JOSAA..26.1576K. doi:10.1364/JOSAA.26.001576. PMID 19568292.
  7. Pesch, K. L.; Simmert, U. (1929). "Combined assays for lactose and galactose by enzymatic reactions". Milchw. Forsch. 8: 551.
  8. Anoopkumar-Dukie, S; Carey, JB; Conere, T; O'Sullivan, E; Van Pelt, FN; Allshire, A (2005). "Resazurin assay of radiation response in cultured cells". British Journal of Radiology. 78 (934): 945–7. doi:10.1259/bjr/54004230. PMID 16177019.
  9. UptiBlue viable cell assay technical manual
  10. Kurin, Elena; Atanasov, Atanas; Donath, Oliver; Heiss, Elke; Dirsch, Verena; Nagy, Milan (2012). "Synergy Study of the Inhibitory Potential of Red Wine Polyphenols on Vascular Smooth Muscle Cell Proliferation". Planta Medica. 78 (8): 772–8. doi:10.1055/s-0031-1298440. PMID 22499559.
  11. González-Pinzón, Ricardo; Haggerty, Roy; Myrold, David D. (2012). "Measuring aerobic respiration in stream ecosystems using the resazurin-resorufin system" (PDF). Journal of Geophysical Research. 117 (G3): G00N06. Bibcode:2012JGRG..117.0N06G. doi:10.1029/2012JG001965.
  12. Shahangian, S.; Ash, K. O.; Rollins, D. E. (1984). "An Enzymatic Method for the Analysis of Formate in Human Plasma". Journal of Analytical Toxicology. 8 (6): 273–6. doi:10.1093/jat/8.6.273. PMID 6549198.
  13. Hanson, NQ; Freier, EF (1983). "Effect of protein on the determination of total bile acids in serum". Clinical Chemistry. 29 (1): 171–5. doi:10.1093/clinchem/29.1.171. PMID 6571720.
  14. De Jong, Donald W.; Woodlief, William G. (1977). "Fluorimetric assay of tobacco leaf dehydrogenases with resazurin". Biochimica et Biophysica Acta (BBA) - Enzymology. 484 (2): 249–59. doi:10.1016/0005-2744(77)90081-X. PMID 20957.
  15. Barnes, Stephen; Spenney, Jerry G. (1980). "Stoichiometry of the nadh-oxidoreductase reaction for dehydrogenase determinations". Clinica Chimica Acta. 107 (3): 149–54. doi:10.1016/0009-8981(80)90442-8. PMID 6893684.
  16. Winartasaputra, H; Mallet, VN; Kuan, SS; Guilbault, GG (1980). "Fluorometric and colorimetric enzymic determination of triglycerides (triacylglycerols) in serum". Clinical Chemistry. 26 (5): 613–7. doi:10.1093/clinchem/26.5.613. PMID 6894889.
  17. Chapman, Justin; Zhou, Mingjie (1999). "Microplate-based fluorometric methods for the enzymatic determination of l-glutamate: application in measuring l-glutamate in food samples". Analytica Chimica Acta. 402 (1–2): 47–52. doi:10.1016/S0003-2670(99)00533-4.
  18. Jouanneau, S.; Recoules, L.; Durand, M.J; Boukabache, A.; Picot, V.; Primault, Y.; Lakel, A.; Sengelin, M.; Barillon, B.; Thouand, G. (2014). "Methods for assessing biochemical oxygen demand (BOD): A review". Water Research. 49: 62–82. doi:10.1016/j.watres.2013.10.066. PMID 24316182.
  19. Haggerty, Roy; Martí, Eugènia; Argerich, Alba; Von Schiller, Daniel; Grimm, Nancy B. (2009). "Resazurin as a 'smart' tracer for quantifying metabolically active transient storage in stream ecosystems". Journal of Geophysical Research. 114 (G3): G03014. Bibcode:2009JGRG..114.3014H. doi:10.1029/2008JG000942. hdl:10261/38263.
  20. A US 2376283 A, Frank Short Wallace & Peter Oxley, "Dyestuffs suitable for use as indicators", published 1945-05-15, assigned to Boots Pure Drug Co Ltd
  21. Zhou, M., Diwu, Z., Panchuk-Voloshina, N., et al. A stable nonfluorescent derivative of resorufin for the fluorometric determination of trace hydrogen peroxide: Applications in detecting the activity of phagocyte NADPH oxidase and other oxidases. Anal Biochem 253 162-168 (1997)
  22. "10-Acetyl-3,7-dihydroxyphenoxazine (CAS 119171-73-2) | Cayman Chemical".
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