Pseudomonas sRNA P1
Pseudomonas sRNA P1 is a ncRNA that was predicted using bioinformatic tools in the genome of the opportunistic pathogen Pseudomonas aeruginosa and its expression verified by northern blot analysis.[1]
| Pseudomonas sRNA P1 | |
|---|---|
 Predicted secondary structure and sequence conservation of P1 | |
| Identifiers | |
| Symbol | P1 |
| Rfam | RF00623 |
| Other data | |
| RNA type | Gene |
| Domain(s) | Bacteria |
| SO | 0000655 |
| PDB structures | PDBe |
There appears to be two related copies of P1 sRNA in the P. aeruginosa PA01 genome and both copies appear to be located upstream of predicted glutamine synthetase genes. This sRNA appears to be conserved amongst several Pseudomonas species. P1 has a predicted Rho independent terminator at the 3′ end but the function of P1 is unknown.[1]
See also
References
- Livny J, Brencic A, Lory S, Waldor MK (2006). "Identification of 17 Pseudomonas aeruginosa sRNAs and prediction of sRNA-encoding genes in 10 diverse pathogens using the bioinformatic tool sRNAPredict2". Nucleic Acids Res. 34 (12): 3484–3493. doi:10.1093/nar/gkl453. PMC 1524904. PMID 16870723.
External links
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