LZTR1

LZTR1
Identifiers
Aliases	LZTR1, BTBD29, LZTR-1, SWNTS2, NS10, leucine-zipper-like transcription regulator 1, leucine zipper like transcription regulator 1, NS2
External IDs	OMIM: 600574 MGI: 1914113 HomoloGene: 4925 GeneCards: LZTR1
Gene location (Human)
Chr.	Chromosome 22 (human)[1]
End	20,999,032 bp[1]
Gene location (Mouse)
Chr.	Chromosome 16 (mouse)[2]
End	17,526,333 bp[2]
RNA expression pattern
	More reference expression data
Gene ontology
Molecular function	• GO:0001131, GO:0001151, GO:0001130, GO:0001204 DNA-binding transcription factor activity;
Cellular component	• Golgi apparatus;
Biological process	• anatomical structure morphogenesis; • regulation of transcription, DNA-templated;
	Sources:Amigo / QuickGO
Orthologs
	8216
	66863
	ENSG00000099949
	ENSMUSG00000022761
	Q8N653
	Q9CQ33
	NM_006767
	NM_025808; NM_001331226; NM_001331227
	NP_006758
	NP_001318155; NP_001318156; NP_080084
	Wikidata
View/Edit Human	View/Edit Mouse

Leucine-zipper-like transcriptional regulator 1 is a protein that in humans is encoded by the LZTR1 gene.[5][6][7]

Leucine Zipper Transcription Regulator Protein Structure

The LZTR1 gene provides instructions for making a protein among the class of the superfamily broad complex, tamtrack & brick-a-bac / poxvirus and zinc finger (BTB/POZ). The superfamily of proteins has a wide range of functions including chromatin condensation during conformation of the cell cycle. Other names associated with the LZTR gene are: BTBD29, LZTR-1, NS10, NS2, SWNTS2. This gene encodes a member of the BTB-kelch superfamily. Initially described as a putative transcriptional regulator based on weak homology to members of the basic leucine zipper-like family, the encoded protein subsequently has been shown to localize exclusively to the Golgi network where it may help stabilize the Golgi complex.[7]

Function

Based on its role in several tumor types, the LZTR1 protein is thought to act as a tumor suppressor. Tumor suppressors are proteins that keep cells from growing and dividing too rapidly or in an uncontrolled way. The LZTR1 is a non-specific protein that is found in all cells inside the body. It is believed to be a transcriptional regulator that is typically degraded on apoptotic cells. The protein will be phosphorylated at its tyrosine receptors that will target it for degradation. Intracellularly, LZTR proteins will found in the Golgi apparatus. Studies suggest that the LZTR1 protein may help stabilize this structure. LTZR1 protein could possibly be associated with the CUL3 ubiquitin ligase (Cullin-Based Ubiquitin Ligase 3) complex that helps function to destroy unneeded proteins in the cell. It has also been observed that LZTR protein will inhibit Ras signaling in the membrane by reducing the affinity of Ras to the membrane. Ras belongs to the family of GTPases that are involved in transcription regulation and activation of Raf enzymes. Raf molecules will cascade phosphorylate other molecules in the body to have a wide impact on a cell. Studies using immunoprecipitation of endogenous LZTR1 followed by Western blotting were used to find the function of the LZTR gene. By trapping LZTR1 complexes from intact mammalian cells, Steklov et al. (2018) identified the guanosine triphosphatase RAS as a substrate for the LZTR1-CUL3 complex.[8]

Gene

The LZTR 1 gene is located on Chromosome 22: more specifically on the long arm at 22q11.21. The gene is approximately 16,768 base pairs long.

Mutations

Studies have found that mutations in the LZTR1 gene were found in malignant cancerous cells in the tumors of patients with glioblastoma. These mutations were found to be somatic, typically caused by environmental factors, and the loss of the LZTR1 gene are seen in the cells that are divided uncontrollably.

DiGeorge Syndrome

DiGeorge syndrome.[7] (known as 22q11.2 deletion) caused by a deletion in the 22nd chromosome. Some of the typical symptoms associated with DiGeorge Syndrome are specific facial structure, congenital heart disease, and developmental delays. The implications of LTZR1 mutations were first diagnosed in DiGeorge patients. Studies have showed that deletion or mutation of the LZTR1 are identified in most patients that have been diagnosed with DiGeorge syndrome. The transcriptional regulation capabilities of the LZTR1 gene may play an important role in embryogenesis and is observed in several fetal organs.[9]

Noonan syndrome

Noonan syndrome is an autosomal dominant multisystem disorder characterized by a wide phenotypic spectrum including distinctive facial dysmorphism, postnatal growth retardation, short stature, ectodermal and skeletal defects, congenital heart anomalies, renal anomalies, lymphatic malformations, bleeding difficulties and variable cognitive deficits.

Studies have shown that in 29 genes there were 163 variants in patients suffering from Noonan Syndrome. In the study, using In Silco software, the heterozygous missense mutation of the LZTR1 gene at exon 4 was the most pathogenic.[10] This missense mutation will lead to a substitution of an alanine to valine in the primary structure of amino acid for the LZTR protein.

Schwannomatosis

In patients with schwannomatosis, more than fifty different mutations in the LZTR1 gene are observed..[11] These mutations themselves are not sufficient to cause the disorder, but are typically associated with it. The somatic changes from environmental factors are also seen in patients with schwannomatosis. When the gene is altered, the LTZR protein cannot function properly to regulate the cell cycle by controlling the growth division. This unregulated growth will lead to cancerous growth along the Schwann cells.

gollark: Unfortunately, I can't block *that* due to metatable limitations.

gollark: See, this is done entirely with plain metatables!

gollark: Also `debug`, although it's optional for most features.

gollark: I can't practically port everything to OC, it leans a ton on CC/CraftOS libraries.

gollark: When I say "most", I mean "about 10% at most", but you know.

References

GRCh38: Ensembl release 89: ENSG00000099949 - Ensembl, May 2017
GRCm38: Ensembl release 89: ENSMUSG00000022761 - Ensembl, May 2017
"Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
"Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
Kurahashi H, Akagi K, Inazawa J, Ohta T, Niikawa N, Kayatani F, Sano T, Okada S, Nishisho I (Sep 1995). "Isolation and characterization of a novel gene deleted in DiGeorge syndrome". Hum Mol Genet. 4 (4): 541–9. doi:10.1093/hmg/4.4.541. PMID 7633402.
Nacak TG, Leptien K, Fellner D, Augustin HG, Kroll J (Feb 2006). "The BTB-kelch protein LZTR-1 is a novel Golgi protein that is degraded upon induction of apoptosis". J Biol Chem. 281 (8): 5065–71. doi:10.1074/jbc.M509073200. PMID 16356934.
"Entrez Gene: LZTR1 leucine-zipper-like transcription regulator 1".
"OMIM Entry - * 600574 - LEUCINE ZIPPER-LIKE TRANSCRIPTIONAL REGULATOR 1; LZTR1". www.omim.org. Retrieved 2019-04-18.
Kurahashi, H.; Akagi, K.; Inazawa, J.; Ohta, T.; Niikawa, N.; Kayatani, F.; Sano, T.; Okada, S.; Nishisho, I. (April 1995). "Isolation and characterization of a novel gene deleted in DiGeorge syndrome". Human Molecular Genetics. 4 (4): 541–549. doi:10.1093/hmg/4.4.541. ISSN 0964-6906. PMID 7633402.
Reference, Genetics Home. "Noonan syndrome". Genetics Home Reference. Retrieved 2019-04-18.
Piotrowski A, Xie J, Liu YF, Poplawski AB, Gomes AR, Madanecki P, Fu C, Crowley MR, Crossman DK, Armstrong L, Babovic-Vuksanovic D, Bergner A, Blakeley JO, Blumenthal AL, Daniels MS, Feit H, Gardner K, Hurst S, Kobelka C, Lee C, Nagy R, Rauen KA, Slopis JM, Suwannarat P, Westman JA, Zanko A, Korf BR, Messiaen LM (Dec 2013). "Germline loss-of-function mutations in LZTR1 predispose to an inherited disorder of multiple schwannomas". Nat Genet. 46 (2): 182–7. doi:10.1038/ng.2855. PMC 4352302. PMID 24362817.