LMO4

LIM domain transcription factor LMO4 is a protein that in humans is encoded by the LMO4 gene.[5]

LMO4
Available structures PDB Ortholog search: PDBe RCSB List of PDB id codes 2L4Z
Identifiers
Aliases	LMO4, LIM domain only 4
External IDs	OMIM: 603129 MGI: 109360 HomoloGene: 4927 GeneCards: LMO4
Gene location (Human) Chr. Chromosome 1 (human)[1] Band 1p22.3 Start 87,328,880 bp[1] End 87,348,923 bp[1]
Gene location (Mouse) Chr. Chromosome 3 (mouse)[2] Band 3 H2|3 68.61 cM Start 144,188,530 bp[2] End 144,205,220 bp[2]
RNA expression pattern More reference expression data
Gene ontology Molecular function • GO:0001131, GO:0001151, GO:0001130, GO:0001204 DNA-binding transcription factor activity • metal ion binding • GO:0001948 protein binding • GO:0001158 core promoter proximal region sequence-specific DNA binding • transcription factor binding Cellular component • transcription factor complex • cell leading edge Biological process • regulation of transcription, DNA-templated • ventricular septum development • spinal cord association neuron differentiation • thymus development • negative regulation of protein complex assembly • transcription, DNA-templated • ventral spinal cord interneuron differentiation • regulation of cell activation • spinal cord motor neuron differentiation • regulation of cell fate specification • positive regulation of transcription from RNA polymerase II promoter • neural tube closure • transcription from RNA polymerase II promoter • positive regulation of kinase activity • regulation of cell migration Sources:Amigo / QuickGO
Orthologs
Species	Human	Mouse
Entrez	8543	16911
Ensembl	ENSG00000143013	ENSMUSG00000028266
UniProt	P61968	P61969
RefSeq (mRNA)	NM_006769 NM_001369491	NM_001161769 NM_001161770 NM_010723
RefSeq (protein)	NP_006760 NP_001356420	NP_001155241 NP_001155242 NP_034853
Location (UCSC)	Chr 1: 87.33 – 87.35 Mb	Chr 3: 144.19 – 144.21 Mb
PubMed search	[3]	[4]
Wikidata
View/Edit Human View/Edit Mouse

LIM domain only 4 is a cysteine-rich, two LIM domain-containing protein that may play a role as a transcriptional regulator or possibly an oncogene. Its mRNA is characterized by a GC-rich 5' region and by multiple ATTT motifs in the 3' region. A variant transcript missing a portion of the 5' region has been identified but cannot be confirmed because of the GC-rich nature of the region.[5]

Interactions

LMO4 has been shown to interact with LDB1,[6][7] RBBP8[6][8] and BRCA1.[6][8]

References

1. GRCh38: Ensembl release 89: ENSG00000143013 - Ensembl, May 2017
2. GRCm38: Ensembl release 89: ENSMUSG00000028266 - Ensembl, May 2017
3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. "Entrez Gene: LMO4 LIM domain only 4".
6. Sutherland, Kate D; Visvader Jane E; Choong David Y H; Sum Eleanor Y M; Lindeman Geoffrey J; Campbell Ian G (Oct 2003). "Mutational analysis of the LMO4 gene, encoding a BRCA1-interacting protein, in breast carcinomas". Int. J. Cancer. 107 (1): 155–8. doi:10.1002/ijc.11343. ISSN 0020-7136. PMID 12925972.
7. Deane, Janet E; Mackay Joel P; Kwan Ann H Y; Sum Eleanor Y M; Visvader Jane E; Matthews Jacqueline M (May 2003). "Structural basis for the recognition of ldb1 by the N-terminal LIM domains of LMO2 and LMO4". EMBO J. 22 (9): 2224–33. doi:10.1093/emboj/cdg196. ISSN 0261-4189. PMC 156068. PMID 12727888.
8. Sum, Eleanor Y M; Peng Benjamin; Yu Xin; Chen Junjie; Byrne Jennifer; Lindeman Geoffrey J; Visvader Jane E (Mar 2002). "The LIM domain protein LMO4 interacts with the cofactor CtIP and the tumor suppressor BRCA1 and inhibits BRCA1 activity". J. Biol. Chem. 277 (10): 7849–56. doi:10.1074/jbc.M110603200. ISSN 0021-9258. PMID 11751867.

Further reading

• Kenny DA, Jurata LW, Saga Y, Gill GN (1998). "Identification and characterization of LMO4, an LMO gene with a novel pattern of expression during embryogenesis". Proc. Natl. Acad. Sci. U.S.A. 95 (19): 11257–62. Bibcode:1998PNAS...9511257K. doi:10.1073/pnas.95.19.11257. PMC 21629. PMID 9736723.
• Racevskis J, Dill A, Sparano JA, Ruan H (1999). "Molecular cloning of LMO41, a new human LIM domain gene". Biochim. Biophys. Acta. 1445 (1): 148–53. doi:10.1016/s0167-4781(99)00037-8. PMID 10209267.
• Tse E, Grutz G, Garner AA, et al. (2000). "Characterization of the Lmo4 gene encoding a LIM-only protein: genomic organization and comparative chromosomal mapping". Mamm. Genome. 10 (11): 1089–94. doi:10.1007/s003359901167. PMID 10556429.
• Sum EY, Peng B, Yu X, et al. (2002). "The LIM domain protein LMO4 interacts with the cofactor CtIP and the tumor suppressor BRCA1 and inhibits BRCA1 activity". J. Biol. Chem. 277 (10): 7849–56. doi:10.1074/jbc.M110603200. PMID 11751867.
• Deane JE, Visvader JE, Mackay JP, Matthew JM (2003). "1H, 15N and 13C assignments of FLIN4, an intramolecular LMO4:ldb1 complex". J. Biomol. NMR. 23 (2): 165–6. doi:10.1023/A:1016363414644. PMID 12153047.
• Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.
• Vu D, Marin P, Walzer C, et al. (2003). "Transcription regulator LMO4 interferes with neuritogenesis in human SH-SY5Y neuroblastoma cells". Brain Res. Mol. Brain Res. 115 (2): 93–103. doi:10.1016/S0169-328X(03)00119-0. PMID 12877980.
• Manetopoulos C, Hansson A, Karlsson J, et al. (2003). "The LIM-only protein LMO4 modulates the transcriptional activity of HEN1". Biochem. Biophys. Res. Commun. 307 (4): 891–9. doi:10.1016/S0006-291X(03)01298-1. PMID 12878195.
• Sutherland KD, Visvader JE, Choong DY, et al. (2003). "Mutational analysis of the LMO4 gene, encoding a BRCA1-interacting protein, in breast carcinomas". Int. J. Cancer. 107 (1): 155–8. doi:10.1002/ijc.11343. PMID 12925972.
• Colland F, Jacq X, Trouplin V, et al. (2004). "Functional proteomics mapping of a human signaling pathway". Genome Res. 14 (7): 1324–32. doi:10.1101/gr.2334104. PMC 442148. PMID 15231748.
• Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC 528928. PMID 15489334.
• Novotny-Diermayr V, Lin B, Gu L, Cao X (2005). "Modulation of the interleukin-6 receptor subunit glycoprotein 130 complex and its signaling by LMO4 interaction". J. Biol. Chem. 280 (13): 12747–57. doi:10.1074/jbc.M500175200. PMID 15677447.
• Sun T, Patoine C, Abu-Khalil A, et al. (2005). "Early asymmetry of gene transcription in embryonic human left and right cerebral cortex". Science. 308 (5729): 1794–8. Bibcode:2005Sci...308.1794S. doi:10.1126/science.1110324. PMC 2756725. PMID 15894532.
• Sum EY, Segara D, Duscio B, et al. (2005). "Overexpression of LMO4 induces mammary hyperplasia, promotes cell invasion, and is a predictor of poor outcome in breast cancer". Proc. Natl. Acad. Sci. U.S.A. 102 (21): 7659–64. Bibcode:2005PNAS..102.7659S. doi:10.1073/pnas.0502990102. PMC 1140463. PMID 15897450.
• Jeffries CM, Graham SC, Stokes PH, et al. (2007). "Stabilization of a binary protein complex by intein-mediated cyclization". Protein Sci. 15 (11): 2612–8. doi:10.1110/ps.062377006. PMC 2242402. PMID 17001033.