CHMP1A

Charged multivesicular body protein 1a is a protein that in humans is encoded by the CHMP1A gene.[5][6][7]

CHMP1A
Available structures PDB Ortholog search: PDBe RCSB List of PDB id codes 2JQ9, 2YMB, 4A5X
Identifiers
Aliases	CHMP1A, CHMP1, PCH8, PCOLN3, PRSM1, VPS46-1, VPS46A, charged multivesicular body protein 1A
External IDs	OMIM: 164010 MGI: 1920159 HomoloGene: 56240 GeneCards: CHMP1A
Gene location (Human) Chr. Chromosome 16 (human)[1] Band 16q24.3 Start 89,644,435 bp[1] End 89,657,721 bp[1]
Gene location (Mouse) Chr. Chromosome 8 (mouse)[2] Band 8|8 E1 Start 123,204,264 bp[2] End 123,212,763 bp[2]
Gene ontology Molecular function • protein homodimerization activity • protein domain specific binding • zinc ion binding • GO:0001948 protein binding • identical protein binding • metallopeptidase activity Cellular component • cytoplasm • endosome • membrane • microtubule organizing center • condensed nuclear chromosome • early endosome • endosome membrane • extracellular exosome • endomembrane system • cell nucleus • nuclear matrix • ESCRT III complex • multivesicular body Biological process • gene silencing • negative regulation of transcription by glucose • regulation of centrosome duplication • regulation of transcription, DNA-templated • viral budding via host ESCRT complex • nucleus organization • multivesicular body assembly • regulation of mitotic spindle assembly • transcription, DNA-templated • cell division • protein transport • cell cycle • cell separation after cytokinesis • mitotic metaphase plate congression • negative regulation of transcription, DNA-templated • vacuolar transport • ESCRT III complex disassembly • proteolysis • mitotic chromosome condensation • vesicle-mediated transport • transport • endosome transport via multivesicular body sorting pathway • late endosome to vacuole transport • negative regulation of cell cycle • midbody abscission Sources:Amigo / QuickGO
Orthologs
Species	Human	Mouse
Entrez	5119	234852
Ensembl	ENSG00000131165	ENSMUSG00000000743
UniProt	Q9HD42	Q921W0
RefSeq (mRNA)	NM_001083314 NM_002768	NM_145606
RefSeq (protein)	NP_001076783 NP_002759	NP_663581
Location (UCSC)	Chr 16: 89.64 – 89.66 Mb	Chr 8: 123.2 – 123.21 Mb
PubMed search	[3]	[4]
Wikidata
View/Edit Human View/Edit Mouse

Function

This gene encodes a member of the CHMP/Chmp family of proteins which are involved in multivesicular body sorting of proteins to the interiors of lysosomes. The initial prediction of the protein sequence encoded by this gene suggested that the encoded protein was a metallopeptidase. The nomenclature has been updated recently to reflect the correct biological function of this encoded protein.[7]

Interactions

CHMP1A has been shown to interact with VPS4A.[5]

References

1. GRCh38: Ensembl release 89: ENSG00000131165 - Ensembl, May 2017
2. GRCm38: Ensembl release 89: ENSMUSG00000000743 - Ensembl, May 2017
3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. Howard TL, Stauffer DR, Degnin CR, Hollenberg SM (July 2001). "CHMP1 functions as a member of a newly defined family of vesicle trafficking proteins". Journal of Cell Science. 114 (Pt 13): 2395–404. PMID 11559748.
6. Stauffer DR, Howard TL, Nyun T, Hollenberg SM (July 2001). "CHMP1 is a novel nuclear matrix protein affecting chromatin structure and cell-cycle progression". Journal of Cell Science. 114 (Pt 13): 2383–93. PMID 11559747.
7. "Entrez Gene: PCOLN3 procollagen (type III) N-endopeptidase".

External links

• Human CHMP1A genome location and CHMP1A gene details page in the UCSC Genome Browser.

Further reading

• Nomura N, Nagase T, Miyajima N, Sazuka T, Tanaka A, Sato S, et al. (1995). "Prediction of the coding sequences of unidentified human genes. II. The coding sequences of 40 new genes (KIAA0041-KIAA0080) deduced by analysis of cDNA clones from human cell line KG-1". DNA Research. 1 (5): 223–9. doi:10.1093/dnares/1.5.223. PMID 7584044.
• Scott IC, Halila R, Jenkins JM, Mehan S, Apostolou S, Winqvist R, et al. (September 1996). "Molecular cloning, expression and chromosomal localization of a human gene encoding a 33 kDa putative metallopeptidase (PRSM1)". Gene. 174 (1): 135–43. doi:10.1016/0378-1119(96)00510-0. PMID 8863740.
• Yoshida H, Haze K, Yanagi H, Yura T, Mori K (December 1998). "Identification of the cis-acting endoplasmic reticulum stress response element responsible for transcriptional induction of mammalian glucose-regulated proteins. Involvement of basic leucine zipper transcription factors". The Journal of Biological Chemistry. 273 (50): 33741–9. doi:10.1074/jbc.273.50.33741. PMID 9837962.
• Tong WY, Nagano-Fujii M, Hidajat R, Deng L, Takigawa Y, Hotta H (December 2002). "Physical interaction between hepatitis C virus NS4B protein and CREB-RP/ATF6beta" (PDF). Biochemical and Biophysical Research Communications. 299 (3): 366–72. doi:10.1016/S0006-291X(02)02638-4. PMID 12445808.
• Strack B, Calistri A, Craig S, Popova E, Göttlinger HG (September 2003). "AIP1/ALIX is a binding partner for HIV-1 p6 and EIAV p9 functioning in virus budding". Cell. 114 (6): 689–99. doi:10.1016/S0092-8674(03)00653-6. PMID 14505569. S2CID 10733770.
• von Schwedler UK, Stuchell M, Müller B, Ward DM, Chung HY, Morita E, et al. (September 2003). "The protein network of HIV budding". Cell. 114 (6): 701–13. doi:10.1016/S0092-8674(03)00714-1. PMID 14505570. S2CID 16894972.
• Martin-Serrano J, Yarovoy A, Perez-Caballero D, Bieniasz PD, Yaravoy A (October 2003). "Divergent retroviral late-budding domains recruit vacuolar protein sorting factors by using alternative adaptor proteins". Proceedings of the National Academy of Sciences of the United States of America. 100 (21): 12414–9. Bibcode:2003PNAS..10012414M. doi:10.1073/pnas.2133846100. PMC 218772. PMID 14519844.
• Ewing RM, Chu P, Elisma F, Li H, Taylor P, Climie S, et al. (2007). "Large-scale mapping of human protein-protein interactions by mass spectrometry". Molecular Systems Biology. 3 (1): 89. doi:10.1038/msb4100134. PMC 1847948. PMID 17353931.
• Row PE, Liu H, Hayes S, Welchman R, Charalabous P, Hofmann K, et al. (October 2007). "The MIT domain of UBPY constitutes a CHMP binding and endosomal localization signal required for efficient epidermal growth factor receptor degradation" (PDF). The Journal of Biological Chemistry. 282 (42): 30929–37. doi:10.1074/jbc.M704009200. PMID 17711858. S2CID 28086824.