Conversion from MP4 to WAV results in desync with FFmpeg, but not when using VLC

Question

Converstion to .wav from .mp4 video causes a desynchronization when the conversion is done with FFmpeg, but not when with VLC. I've been trying to figure this out for days now and any help is greatly appreaciated :)

I start with a video recorded with OBS in .flv. I then use a batch file with FFmpeg:

"for %%a in ("*.flv") do ffmpeg -i %%a -vcodec copy -acodec copy %%~na.mp4
pause"

which gives me the .mp4 file.

I then use VLC GUI method to convert the audio in the .mp4 into .wav so I can better edit it in Audacity. I tried using a batch file with FFmpeg instead of VLC's GUI to make it more streamlined. However, whenever I do the conversion using a batch file and FFmpeg and then put the FFmpeg converted .wav file on the timeline in Adobe Premiere along with the .mp4 video, the audio of the .wav, that is converted with FFmpeg is offset with the .mp4 video's audio track, but when the same to .wav conversion is done with VLC's GUI the resulting .wav and the original .mp4 audio tracks are in sync.

The batch files I have tried with different options, but still resulting in the .mp4 and .wav file audio tracks not matching are as follows:

"for %%a in ("*.mp4") do ffmpeg -i %%a -vn %%~na.wav pause"    


"for %%a in ("*.flv") do ffmpeg -i %%a -acodec pcm_s16le %%~na.wav pause"    


"for %%a in ("*.mp4") do ffmpeg -i %%a -ab 1536k -ac 2 -ar 48000 -acodec pcm_s16le %%~na.wav -loglevel verbose -report -stats  pause"  


"for %%a in ("*.flv") do ffmpeg -i %%a -vcodec copy -acodec copy %%~na.mp4 %%~na.aac -loglevel verbose -report pause"

I've also tried to use the options:

-vn -copyts -ss 0 -y -avoid_negative_ts 1 -async 1 ...etc.

all to no avail.

Since VLC can handle the same conversion then it must mean that I am not just using the correct syntax : /

EDIT: The console output for

"for %%a in ("*.mp4") do ffmpeg -i %%a -vn %%~na.wav -loglevel verbose -report pause":

Y:\Dxtory\Cataclysm Dark Days Ahead\Test Batch File>for %a in ("*.mp4") do ffmpe
g -i %a -vn %~na.wav

Y:\Dxtory\Cataclysm Dark Days Ahead\Test Batch File>ffmpeg -i CataclysmDDAWCam0M
icOff2nd.mp4 -vn CataclysmDDAWCam0MicOff2nd.wav
ffmpeg version N-62162-gec8789a Copyright (c) 2000-2014 the FFmpeg developers
  built on Apr  4 2014 22:08:30 with gcc 4.8.2 (GCC)
  configuration: --enable-gpl --enable-version3 --disable-w32threads --enable-av
isynth --enable-bzlib --enable-fontconfig --enable-frei0r --enable-gnutls --enab
le-iconv --enable-libass --enable-libbluray --enable-libcaca --enable-libfreetyp
e --enable-libgsm --enable-libilbc --enable-libmodplug --enable-libmp3lame --ena
ble-libopencore-amrnb --enable-libopencore-amrwb --enable-libopenjpeg --enable-l
ibopus --enable-librtmp --enable-libschroedinger --enable-libsoxr --enable-libsp
eex --enable-libtheora --enable-libtwolame --enable-libvidstab --enable-libvo-aa
cenc --enable-libvo-amrwbenc --enable-libvorbis --enable-libvpx --enable-libwavp
ack --enable-libx264 --enable-libx265 --enable-libxavs --enable-libxvid --enable
-zlib
  libavutil      52. 74.100 / 52. 74.100
  libavcodec     55. 57.100 / 55. 57.100
  libavformat    55. 36.101 / 55. 36.101
  libavdevice    55. 11.100 / 55. 11.100
  libavfilter     4.  3.100 /  4.  3.100
  libswscale      2.  6.100 /  2.  6.100
  libswresample   0. 18.100 /  0. 18.100
  libpostproc    52.  3.100 / 52.  3.100
Input #0, mov,mp4,m4a,3gp,3g2,mj2, from 'CataclysmDDAWCam0MicOff2nd.mp4':
  Metadata:
    major_brand     : isom
    minor_version   : 512
    compatible_brands: isomiso2avc1mp41
    encoder         : Lavf55.36.101
  Duration: 00:00:17.67, start: 0.000000, bitrate: 99559 kb/s
    Stream #0:0(und): Video: h264 (High) (avc1 / 0x31637661), yuv420p(tv, bt709)
, 1920x1080, 99437 kb/s, 30 fps, 30 tbr, 16k tbn, 60 tbc (default)
    Metadata:
      handler_name    : VideoHandler
    Stream #0:1(und): Audio: aac (mp4a / 0x6134706D), 48000 Hz, stereo, fltp, 10
9 kb/s (default)
    Metadata:
      handler_name    : SoundHandler
Output #0, wav, to 'CataclysmDDAWCam0MicOff2nd.wav':
  Metadata:
    major_brand     : isom
    minor_version   : 512
    compatible_brands: isomiso2avc1mp41
    ISFT            : Lavf55.36.101
    Stream #0:0(und): Audio: pcm_s16le ([1][0][0][0] / 0x0001), 48000 Hz, stereo
, s16, 1536 kb/s (default)
    Metadata:
      handler_name    : SoundHandler
Stream mapping:
  Stream #0:1 -> #0:0 (aac -> pcm_s16le)
Press [q] to stop, [?] for help
size=    3304kB time=00:00:17.62 bitrate=1536.0kbits/s
video:0kB audio:3304kB subtitle:0kB other streams:0kB global headers:0kB muxing
overhead: 0.002365%

Y:\Dxtory\Cataclysm Dark Days Ahead\Test Batch File>pause
Press any key to continue . . .

EDIT: Added a new shorter test .flv, .mp4 and two .wav files converted with FFmpeg and VLC, console output and log file to Google Drive https://drive.google.com/folderview?id=0B1bpDgYQQ_bMMmhmcDEtcldhSUE&usp=sharing