If you have on-board video-card, which almost every computer has now, since the new CPU's have a built-in graphics card on the chip...
Use that for one of your side monitors. (Since that will be one of the slower ones.) You may have to ENABLE ONBOARD VIDEO in your BIOS, if it is not seen. Some computer builders turn it off, to stop confusion, due to using external PCIe/AGP cards for video-out.
Then use the other two for the remaining monitors, from your graphics-card.
The issue with HDMI/DVI-#1/DVI-#2 on your card, may be that it was intended to be one or the other...
HDMI/DVI-#2 or DVI-#1/DVI-#2, not HDMI/DVI-#1/DVI-#2
Unless it says "3-view" or "2+ monitors", etc... (I have Hydra-vision, so mine has 2 additional mini-DVI, which outputs up to 4 DVI connections per mini-DVI port. There is a special cable needed for that, which I don't have. However, I can still only use one of the mini-DVI port, if I use either HDMI or DVI for the other connections.)
Windows doesn't care what video-cards are used for output. It has direct-access to the RAM and PCIe busses, in the I3-I7 series and higher CPU's. (Which is why memory speed and bus-speeds are tied to CPU speeds. Otherwise the data doesn't align, and can't be read.)
https://www.laptopmag.com/articles/intel-hd-graphics-comparison
Whatever card you have, that is NOT the one built-in to the CPU, will be the controlling card. It just sends the "drawn images" to the other two ports. That requires almost no slow-downs, as the rendered image is low in data. Your internal CPU graphics-card will not be doing any actual processing, except spitting-out the image it was just sent, to the on-board port chip.
The on-board port may be near your USB connections. Often just below them, against the tower-case edge. That may be limited to only HDMI, or DVI, or it may have both, but only one will work. For the same reason as with the video-card... It is one or the other, not split-view. (It was done that way so you wouldn't have to buy a spotty or laggy HDMI->DVI converter, or the other way around.)
http://www.pcstats.com/articleimages/201011/ecsH67H2_d4.jpg
Your video-card software will see all three screens and give you control from those settings, for all three screens. However, that one screen, controlled by your CPU, will also have an individual set of display drivers too. Those will only control that one screen. (Used to adjust things like fit to screen, orientation, etc...)
2You might want to specify your operating system. Edit your question, or at least ad a tag. – CarlF – 2011-06-19T16:04:40.523