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I currently use gmail, but this question is valid for any client: What is the best way to backup and store my email so that in the future I will be able to access it on a variety of platforms and clients.
Update:
While using gmail is certainly cross-platform and they have their own backup system, I am still looking to backup my email myself so that I can definitely know I have control over the backup and storage. I'm fine with letting gmail do it for now, but there's no guarantees.
When backing up Gmail without any Gmail-aware software, one might get duplicate messages due to Gmail's usage of labels. (Like a single Gmail message with multiple labels, appears to be multiple messages in different folders when using IMAP.) – Arjan – 2010-03-23T18:12:34.743
As for backups: one might want to restore a single message one deleted by accident. (Especially when only noting the deletion after new messages have arrived.) Hence it would be nice if one can search for messages, and restore selected messages? – Arjan – 2010-03-23T19:40:21.290