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I have a 1TB Lacie drive on a Firewire 800 interfaced to my iMac, running El-Capitan. The drive is used for data only and is where the /users/myname path points. As it is getting short on space, I purchased a second Lacie 3TB drive and daisy chained it to the first drive. All good, and formatted HFS+ using the Lacie supplied utility. I then re-booted and noticed my desktop and all its app's had disappeared. For some reason, OSX had pointed my /users/myname path to the new drive!!! So, I reset it to where it was, re-booted and then had problems in that although the apps had all re-appeared, nothing would execute and I had a persistent pop up telling my the Library was corrupt, enter password to repair (It didn't work). So, I disconnected the new drive and then went into recovery mode and used TimeMachine to reset to a time before I added the new drive. The persistent message has now stopped, but some of the apps will not work, so I ran a terminal window and noted an error message stating the file system (relating to my data drive) was read-only. I ran Diskutil/first aid and it did not help.
Not sure why this has happened, question is - how do I fix it please?
Do both drives, by any chance, have the same volume name? This can lead to all sorts of confusion. in any case, please add the output of the commands
diskutil list
,mount
, andls -l ls -l /Volumes
to your question, as these will help clarify what's going on. – Gordon Davisson – 2016-12-14T19:03:32.587